miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|O42204|ITM2B_CHICK Integral membrane protein 2B OS=Gallus gallus
GN=ITM2B PE=2 SV=1
Length = 262
Score = 97.8 bits (242), Expect = 2e-20
Identities = 45/49 (91%), Positives = 49/49 (100%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
HRRLTAYLDLSL+KCYVIPLNTS+VMPPK+FLELL+NIKAGTYLPQSYL
Sbjct: 145 HRRLTAYLDLSLDKCYVIPLNTSVVMPPKNFLELLINIKAGTYLPQSYL 193
>sp|O89051|ITM2B_MOUSE Integral membrane protein 2B OS=Mus musculus
GN=Itm2b PE=2 SV=1
Length = 266
Score = 89.7 bits (221), Expect = 5e-18
Identities = 41/49 (83%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPPK+ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYL 198
>sp|Q3T0P7|ITM2B_BOVIN Integral membrane protein 2B OS=Bos taurus
GN=ITM2B PE=2 SV=1
Length = 266
Score = 89.7 bits (221), Expect = 5e-18
Identities = 41/49 (83%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPPK+ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYL 198
>sp|Q5XIE8|ITM2B_RAT Integral membrane protein 2B OS=Rattus
norvegicus GN=Itm2b PE=2 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|Q5R876|ITM2B_PONAB Integral membrane protein 2B OS=Pongo abelii
GN=ITM2B PE=2 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|Q52N47|ITM2B_PIG Integral membrane protein 2B OS=Sus scrofa
GN=ITM2B PE=2 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|A5A6H8|ITM2B_PANTR Integral membrane protein 2B OS=Pan
troglodytes GN=ITM2B PE=2 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|Q60HC1|ITM2B_MACFA Integral membrane protein 2B OS=Macaca
fascicularis GN=ITM2B PE=2 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|Q9Y287|ITM2B_HUMAN Integral membrane protein 2B OS=Homo sapiens
GN=ITM2B PE=1 SV=1
Length = 266
Score = 88.6 bits (218), Expect = 1e-17
Identities = 40/49 (81%), Positives = 48/49 (97%)
Frame = +3
Query: 45 HRRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+++LTAYLDL+L+KCYVIPLNTSIVMPP++ LELL+NIKAGTYLPQSYL
Sbjct: 150 NKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYL 198
>sp|Q5PQL7|ITM2C_RAT Integral membrane protein 2C OS=Rattus
norvegicus GN=Itm2c PE=2 SV=1
Length = 269
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 141 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 199
>sp|Q5NVC3|ITM2C_PONAB Integral membrane protein 2C OS=Pongo abelii
GN=ITM2C PE=2 SV=1
Length = 267
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 139 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 197
>sp|Q06AV4|ITM2C_PIG Integral membrane protein 2C OS=Sus scrofa
GN=ITM2C PE=2 SV=1
Length = 269
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 141 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 199
>sp|Q91VK4|ITM2C_MOUSE Integral membrane protein 2C OS=Mus musculus
GN=Itm2c PE=1 SV=2
Length = 269
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 141 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 199
>sp|Q4R540|ITM2C_MACFA Integral membrane protein 2C OS=Macaca
fascicularis GN=ITM2C PE=2 SV=1
Length = 267
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 139 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 197
>sp|Q9NQX7|ITM2C_HUMAN Integral membrane protein 2C OS=Homo sapiens
GN=ITM2C PE=1 SV=1
Length = 267
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 139 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 197
>sp|A2VDN0|ITM2C_BOVIN Integral membrane protein 2C OS=Bos taurus
GN=ITM2C PE=2 SV=1
Length = 271
Score = 76.3 bits (186), Expect = 6e-14
Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 GLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
G P+ + H R LTAY D+SL+KCYVI LNT+IV+PP++F ELL+N+K GTYLPQ+Y+
Sbjct: 143 GDPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYI 201
>sp|O43736|ITM2A_HUMAN Integral membrane protein 2A OS=Homo sapiens
GN=ITM2A PE=1 SV=2
Length = 263
Score = 65.1 bits (157), Expect = 1e-10
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = +3
Query: 54 LTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+TAYLDL L CY++PLNTSIVMPPK+ +EL + +G YLPQ+Y+
Sbjct: 149 MTAYLDLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYLPQTYV 194
>sp|Q61500|ITM2A_MOUSE Integral membrane protein 2A OS=Mus musculus
GN=Itm2a PE=2 SV=2
Length = 263
Score = 60.1 bits (144), Expect = 4e-09
Identities = 26/46 (56%), Positives = 35/46 (76%)
Frame = +3
Query: 54 LTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLVNIKAGTYLPQSYL 191
+TAYLDL L CY++PLNTSIVM PK+ +EL + +G YLP +Y+
Sbjct: 149 MTAYLDLLLGNCYLMPLNTSIVMTPKNLVELFGKLASGKYLPHTYV 194
