miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 6 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 68
Query: 66 tactgccgcagaaactc 82
|||||||||||||||||
Sbjct: 69 tactgccgcagaaactc 85
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 6 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 65
||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgtgcagtcagaa-aaagcaatcagcaagta 67
Query: 66 tactgccgcagaaa 79
||||||||||||||
Sbjct: 68 tactgccgcagaaa 81
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 73.8 bits (37), Expect = 3e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 agtggttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatcag 59
|||| |||| |||||||||||||||||||||||||||| | | | || |||||||||||
Sbjct: 4 agtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatcag 63
Query: 60 caagtatactgcc 72
|||||||||||||
Sbjct: 64 caagtatactgcc 76
