miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 7 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 68
Query: 67 tactgccgcagaaactct 84
||||||||||||||||||
Sbjct: 69 tactgccgcagaaactct 86
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 99.6 bits (50), Expect = 5e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 7 ttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagcaagta 66
||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||
Sbjct: 9 ttctctggcagtgtcttagctggttgttgtgtgcagtcagaa-aaagcaatcagcaagta 67
Query: 67 tactgccgcagaaa 80
||||||||||||||
Sbjct: 68 tactgccgcagaaa 81
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 75.8 bits (38), Expect = 8e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagtggttctctggcagtgtcttagctggttgttgtgaggagt-gagaacgaagcaatca 59
||||| |||| |||||||||||||||||||||||||||| | | | || ||||||||||
Sbjct: 3 gagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaatca 62
Query: 60 gcaagtatactgcc 73
||||||||||||||
Sbjct: 63 gcaagtatactgcc 76
