miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 88
Score = 157 bits (79), Expect = 4e-38
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 16 gtcgaggggaatgacnccgggtccnaaagagagacnctcgcatggcgtgcgcgtggtgcg 75
||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtcgaggggaatgacgccgggtccgaaagagagacgctcgcatggcgtgcgcgtggtgcg 60
Query: 76 tttcggaccaggcttcattccccatgac 103
||||||||||||||||||||||||||||
Sbjct: 61 tttcggaccaggcttcattccccatgac 88
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattccccatgac 103
|||||||||||||||||||||||||||
Sbjct: 56 ttcggaccaggcttcattccccatgac 82
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattccccatgac 103
|||||||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattccccatgac 77
>RF00075;mir-166;ABEU01003209.1/178750-178656
145481:Physcomitrella patens subsp. patens
Length = 95
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 cgtttcggaccaggcttcattcccc 98
|||||||||||||||||||||||||
Sbjct: 66 cgtttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 gtttcggaccaggcttcattcccc 98
||||||||||||||||||||||||
Sbjct: 76 gtttcggaccaggcttcattcccc 99
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 gtttcggaccaggcttcattcccc 98
||||||||||||||||||||||||
Sbjct: 84 gtttcggaccaggcttcattcccc 107
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 66 tttcggaccaggcttcattcccc 88
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattcccc 92
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 66 tttcggaccaggcttcattcccc 88
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattcccc 92
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 63 tttcggaccaggcttcattcccc 85
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 tttcggaccaggcttcattcccc 98
|||||||||||||||||||||||
Sbjct: 52 tttcggaccaggcttcattcccc 74
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 74 ttcggaccaggcttcattcccc 95
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 120 ttcggaccaggcttcattcccc 141
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccc 91
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 80 ttcggaccaggcttcattcccc 101
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 163 ttcggaccaggcttcattcccc 184
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 97 ttcggaccaggcttcattcccc 118
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 64 ttcggaccaggcttcattcccc 85
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 54 ttcggaccaggcttcattcccc 75
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattcccc 72
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccc 91
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 ttcggaccaggcttcattcccc 98
||||||||||||||||||||||
Sbjct: 59 ttcggaccaggcttcattcccc 80
