miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 157 bits (79), Expect = 4e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 18 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataact 77
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttgtctaacctctttttgagataact 60
Query: 78 atacaatctactgtctttcccaa 100
|||||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcccaa 83
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 103 bits (52), Expect = 5e-22
Identities = 77/84 (91%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 18 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctcttt-ttgagataac 76
|||||||||||||||||||||||||||||||||||| | |||||||| || || ||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttttccgacctctttcttcagttaac 60
Query: 77 tatacaatctactgtctttcccaa 100
||||||||||||||||||||||||
Sbjct: 61 tatacaatctactgtctttcccaa 84
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 99.6 bits (50), Expect = 8e-21
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 24 tgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactatacaa 83
|||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtt-tacatcctccttttgagataactatacaa 65
Query: 84 tctactgtctttcc 97
||||||||||||||
Sbjct: 66 tctactgtctttcc 79
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 87.7 bits (44), Expect = 3e-17
Identities = 69/75 (92%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 24 tgaggtagtagattgaatagttgtggggtt-gtgtaacctctttttgagataactataca 82
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggttcatgt--cctccttttgagataactataca 64
Query: 83 atctactgtctttcc 97
||||||||||||||
Sbjct: 65 gtctactgtctttcc 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 85.7 bits (43), Expect = 1e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 22 gctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactatac 81
|||||||||||||||||||||||||||| || | |||||| ||||||||||||||||
Sbjct: 5 gctgaggtagtagattgaatagttgtggagta-taaaacctccctttgagataactatac 63
Query: 82 aatctactgtctttc 96
|||||||||||||||
Sbjct: 64 aatctactgtctttc 78
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 18 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataact 77
|||||||||||||||||||||||||||||||| | || |||| | ||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 60
Query: 78 atacaatctactgtctttcc 97
||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcc 80
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 75.8 bits (38), Expect = 1e-13
Identities = 70/79 (88%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 21 ggctgaggtagtagattgaatagttgtggggttgtgtaa--cctctttttgagataacta 78
||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtt---taagtcctccctctgagataacta 60
Query: 79 tacaatctactgtctttcc 97
|||| ||||||||||||||
Sbjct: 61 tacagtctactgtctttcc 79
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 67.9 bits (34), Expect = 3e-11
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 20 gggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactat 79
||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||||
Sbjct: 3 gggctgaggtagtagattgtatagttgtgaggttgt-acacctc-ctctgagataactat 60
Query: 80 acaatctactgtctttcc 97
|||||||||||||||||
Sbjct: 61 gcaatctactgtctttcc 78
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 21 ggctgaggtagtagattgaatagttgtggggt 52
||||||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 gagataactatacaatctactgtctttcc 97
|||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 gagataactatacaatctactgtctttcc 97
|||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttcc 78
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 66 tttgagataactatacaatctactgtctttcc 97
|||| |||||||||||||||||||||||||||
Sbjct: 45 tttgggataactatacaatctactgtctttcc 76
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 69 gagataactatacaatctactgtctttc 96
||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 agataactatacaatctactgtctttcc 97
||||||||||||||||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcc 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 68 tgagataactatacaatctactgtctttccc 98
||||||||||||||| |||||||||||||||
Sbjct: 51 tgagataactatacagtctactgtctttccc 81
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 69 gagataactatacaatctactgtctttccca 99
|||||||||||||| ||||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttccca 80
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 taactatacaatctactgtctttcc 97
|||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcc 75
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 gagataactatacaatctactgtctttc 96
|||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77
