miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;CAAE01014581.1/5651544-5651616 99883:Tetraodon
nigroviridis
Length = 73
Score = 113 bits (57), Expect = 4e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 16 agtcgaacagaatcctttctgcacaaactaggatgctttgtcactcagtgtgcggaaacg 75
|||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 1 agtctaacagaatcctttctgcacaaactagaatgatttgacactcagtgtgcggaaacg 60
Query: 76 cttctgctccact 88
|||||||||||||
Sbjct: 61 cttctgctccact 73
>RF00693;mir-147;CAAB01000277.1/126166-126238 31033:Takifugu
rubripes
Length = 73
Score = 97.6 bits (49), Expect = 3e-20
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 16 agtcgaacagaatcctttctgcacaaactaggatgctttgtcactcagtgtgcggaaacg 75
|||| ||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||
Sbjct: 1 agtctaacagaatcctttctgcaccaactagaatgatttaacactcagtgtgcggaaacg 60
Query: 76 cttctgctccact 88
|||||||||||||
Sbjct: 61 cttctgctccact 73
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 16 agtcgaacagaatcctttctgcacaaactaggatgctttgtcactcagtgtgcggaaacg 75
|||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct: 1 agtctaacagaatcgtttctgcacaaactaggacgctttgacactcagtgtgcggaaatg 60
Query: 76 cttctgctc 84
|||||||||
Sbjct: 61 cttctgctc 69
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 16 agtcgaacagaatcctttctgcacaaactaggatgctttgtcactcagtgtgcggaaacg 75
|||| |||||||||||||||||||||||||||||| ||| | |||||||||||||| |
Sbjct: 1 agtctaacagaatcctttctgcacaaactaggatgtttttacggtcagtgtgcggaaatg 60
Query: 76 cttctgct 83
||||||||
Sbjct: 61 cttctgct 68
>RF00693;mir-147;AANH01000229.1/71291-71222 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 70
Score = 60.0 bits (30), Expect = 6e-09
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 21 aacagaatcctttctgcacaaactaggatgctttgtcactcagtgtgcggaaacgcttct 80
|||||||||||||||||||| ||| ||| ||| ||||| ||||||||||| ||||||
Sbjct: 6 aacagaatcctttctgcacacactt---tgcgttgacactcggtgtgcggaaatgcttct 62
Query: 81 gctccact 88
||||||||
Sbjct: 63 gctccact 70
