miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 163 bits (82), Expect = 5e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 10 ctgcttttcttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcttttcttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgc 60
Query: 70 ggtgaatgccaagagagatggc 91
||||||||||||||||||||||
Sbjct: 61 ggtgaatgccaagagagatggc 82
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 133 bits (67), Expect = 5e-31
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 20 tcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 70
Query: 80 aagagag 86
|||||||
Sbjct: 71 aagagag 77
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 117 bits (59), Expect = 3e-26
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcta 71
Query: 81 aga 83
|||
Sbjct: 72 aga 74
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 99.6 bits (50), Expect = 6e-21
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttaa-tatccatacaattaaggcacgcggtgaatgcca 70
Query: 81 agagag 86
||||||
Sbjct: 71 agagag 76
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 97.6 bits (49), Expect = 3e-20
Identities = 62/65 (95%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaa-tgtttatacaattaaggcacgcggtgaatgcca 70
Query: 81 agaga 85
|||||
Sbjct: 71 agaga 75
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 62/64 (96%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcca 69
Query: 81 agag 84
||||
Sbjct: 70 agag 73
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 95.6 bits (48), Expect = 1e-19
Identities = 62/64 (96%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcca 69
Query: 81 agag 84
||||
Sbjct: 70 agag 73
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 93.7 bits (47), Expect = 4e-19
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 17 tcttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaat 76
|||| |||||||||| |||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 8 tctttgtgttcacagtggaccttgatttaatt-tcaatacaattaaggcacgcggtgaat 66
Query: 77 gccaagagaga 87
|||||||||||
Sbjct: 67 gccaagagaga 77
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 89.7 bits (45), Expect = 6e-18
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaa-tgtct-tacaattaaggcacgcggtgaatgcca 69
Query: 81 agaga 85
|||||
Sbjct: 70 agaga 74
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 81.8 bits (41), Expect = 2e-15
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 21 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 80
|||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 cgtgttcacagcgggacctgatttaaatgtccatacaa-taaggcacgcggtgaatgcca 61
Query: 81 a 81
|
Sbjct: 62 a 62
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 18 cttcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatg 77
|||||||||||||| |||||||||||| | ||| | |||||||||||||||||||||||
Sbjct: 9 cttcgtgttcacagtggaccttgatttca-tgtggacacaattaaggcacgcggtgaatg 67
Query: 78 ccaagag 84
|||||||
Sbjct: 68 ccaagag 74
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 20 tcgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcc 79
|||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 11 tcgtgttcacggcggaccttgatttattag-caatacaattaaggcacgcggtgaatgcc 69
Query: 80 aagagag 86
|||||||
Sbjct: 70 aagagag 76
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 56 caattaaggcacgcggtgaatgccaagagaga 87
||||||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaagagaga 76
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 55 acaattaaggcacgcggtgaatgccaagagag 86
||||||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagagag 76
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 acaattaaggcacgcggtgaatgccaag 82
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 caattaaggcacgcggtgaatgccaaga 83
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 aattaaggcacgcggtgaatgccaag 82
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagaga 85
||||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagaga 78
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 caattaaggcacgcggtgaatgccaa 81
||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagag 71
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagag 79
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagag 76
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagag 70
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagag 72
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaagag 84
|||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 22 gtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgccaa 81
|||||||| || ||||||||||||| |||| | || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaa-tgtc-acacgattaaggcacgcagtgaatgccaa 70
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaaga 83
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttaaggcacgcggtgaatgcca 80
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaa 81
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaa 81
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaa 81
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaa 81
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 taaggcacgcggtgaatgccaa 81
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
