miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 220 bits (111), Expect = 4e-57
Identities = 120/123 (97%)
Strand = Plus / Plus
Query: 17 cagatactccctccgtcctaaaattctcgtcttagatttgtctagatatgaatatcaagt 76
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 cagatactccctccgtcctaaaattcttgtcttagatttgtctagatatgaatatcaagt 60
Query: 77 atttagatacatttatttctagataaacctaatacaagaattttaagacggagaaagtat 136
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 61 atttagatacattcatttctagataaacctaatacaagaattttgagacggagaaagtat 120
Query: 137 tat 139
|||
Sbjct: 121 tat 123
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 77.8 bits (39), Expect = 4e-14
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatg 66
||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatg 86
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 77.8 bits (39), Expect = 4e-14
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttgtttagatatgaat 83
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtcta 60
||||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgtcta 44
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 75.8 bits (38), Expect = 2e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
|||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaat 53
Score = 50.1 bits (25), Expect = 9e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtcta 60
|||||||||||||| ||||| ||| ||||||| ||||||||
Sbjct: 133 atactccctccgtcttaaaaatcttgtcttaggtttgtcta 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 79 ttagatacatttatttctagataaacctaatacaagaatttta 121
||||||||||| || |||||| ||| |||| ||||||||||||
Sbjct: 61 ttagatacattcatatctagacaaatctaagacaagaatttta 19
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 75.8 bits (38), Expect = 2e-13
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
||||||||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaat 53
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtcta 60
||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 139 atactccctccgtcccaaaattcttgtcttaggtttgtcta 99
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
|||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaat 53
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtctta 50
|||||||||||||| |||||||| ||||||
Sbjct: 132 tactccctccgtcccaaaattcttgtctta 103
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctaga 62
|||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtctaga 91
Score = 67.9 bits (34), Expect = 4e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
||||||||||||| | |||||||| ||||||||||||| |||||||||||
Sbjct: 4 atactccctccgttccaaaattcttgtcttagatttgtttagatatgaat 53
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 74 agtatttagatacatttatttctagataaacctaatacaagaattttaagacggag 129
||||||||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 71 agtatttagatacatcaatttctagacaaagctaagacaagaattttaggacggag 126
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctaga 62
|||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagctttgtctaga 46
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 74 agtatttagatacatttatttctagataaacctaatacaagaattttaagacggag 129
||||||||||||||| ||||||||| ||| |||| |||||||||||| |||||||
Sbjct: 66 agtatttagatacatcaatttctagacaaagctaagacaagaattttaggacggag 11
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
||||| ||||||| | |||||||| ||||||||||||| |||||||||||
Sbjct: 133 atactacctccgttccaaaattcttgtcttagatttgtttagatatgaat 84
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagatatgaat 69
|||||||||||||| |||||| | ||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaat 53
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagata 64
|||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctagata 54
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagata 64
||||||||| ||| | |||||||| ||||||||||||||| ||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgtcttgata 48
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagata 64
||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctagata 48
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagata 64
||||||||| |||| ||| |||| ||||||||||||||||||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagata 88
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 63.9 bits (32), Expect = 6e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtcta 60
|||||||||||||| |||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgtcta 44
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagata 64
||||| ||||||| | |||||||| |||||||||||| |||||||
Sbjct: 132 atacttcctccgttccaaaattcttgtcttagatttgcctagata 88
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 60.0 bits (30), Expect = 9e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 17 cagatactccctccgtcctaaaattctcgtcttagatttgtctagatatg 66
|||||||||||||||||| |||||||| ||||||||| | | ||||||||
Sbjct: 136 cagatactccctccgtcccaaaattcttgtcttagatgtttttagatatg 87
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 4e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 20 atactccctccgtcctaaaattctcgtcttagatttgtctagata 64
|||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 4 atactccctccgtctcaaaattcttgtcttacatttgtctagata 48
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtcta 60
|||||||||| ||| |||||||| ||||||||||||||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgtcta 92
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagata 64
|||||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttagatttatttagata 58
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 31 gtcctaaaattctcgtcttagatttgtctagatatgaat 69
|||| |||||||| |||||||||||||||| ||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaat 53
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagatatg 66
|||||||||||||| |||||| | |||||| ||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattgttgtcttaaatttgtctaaatatg 50
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 21 tactccctccgtcctaaaattctcgtcttagatttgtctagata 64
|||||||||||||| |||||||| || ||| ||||||||||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagata 88
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 19 gatactccctccgtcctaaaattctcgtcttagatttgtctaga 62
|||||||||||| | | |||||||| ||||||| ||||||||||
Sbjct: 133 gatactccctccattccaaaattcttgtcttagctttgtctaga 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 74 agtatttagatacatttatttctagataaacctaatacaagaatttt 120
||||||||||||||| | ||||||| ||| |||| |||||||||||
Sbjct: 70 agtatttagatacatccagttctagacaaagctaagacaagaatttt 116
>RF00906;MIR1122;AAAA02007993.1/45532-45643 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 cagatactccctccgtcctaaaat 40
||||||||||||||||||||||||
Sbjct: 112 cagatactccctccgtcctaaaat 89
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gatactccctccgtcctaaaat 40
||||||||||||||||||||||
Sbjct: 3 gatactccctccgtcctaaaat 24
>RF00906;MIR1122;AC135864.5/73183-73340 39947:Oryza sativa Japonica
Group
Length = 158
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gatactccctccgtcctaaaat 40
||||||||||||||||||||||
Sbjct: 156 gatactccctccgtcctaaaat 135
