miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 54.0 bits (27), Expect = 2e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 358 tcatgtgttctcaggtcgcccctgcgggact 388
||||||||||||||||||||||||| |||||
Sbjct: 57 tcatgtgttctcaggtcgcccctgctggact 87
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 52.0 bits (26), Expect = 6e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 358 tcatgtgttctcaggtcgcccctgcgggactttc 391
||||||||||||||||||||||||| || |||||
Sbjct: 105 tcatgtgttctcaggtcgcccctgccgggctttc 138
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 3e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 358 tcatgtgttctcaggtcgcccctgc 382
|||||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccctgc 77
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 50.1 bits (25), Expect = 3e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 358 tcatgtgttctcaggtcgcccctgc 382
|||||||||||||||||||||||||
Sbjct: 64 tcatgtgttctcaggtcgcccctgc 88
Score = 46.1 bits (23), Expect = 4e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 tgttctacagggtcgtcctgagaccacatga 55
||||||||||||||| | |||||||||||||
Sbjct: 4 tgttctacagggtcgacatgagaccacatga 34
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 359 catgtgttctcaggtcgcccctgc 382
||||||||||||||||||||||||
Sbjct: 49 catgtgttctcaggtcgcccctgc 72
>RF00695;MIR398;ABXC01000980.1/272433-272305 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 46.1 bits (23), Expect = 4e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 359 catgtgttctcaggtcgcccctgcggg 385
||||||||||||||||||||| |||||
Sbjct: 97 catgtgttctcaggtcgcccccgcggg 123
