miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P55347|PKNX1_HUMAN Homeobox protein PKNOX1 OS=Homo sapiens
GN=PKNOX1 PE=1 SV=3
Length = 436
Score = 60.8 bits (146), Expect(2) = 1e-10
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +3
Query: 12 NELTMSDGAVVTITAPVNMNVDSLQSLSSDGAT 110
+ELTMS+GAVVTIT PVNMNVDSLQSLSSDGAT
Sbjct: 360 SELTMSEGAVVTITTPVNMNVDSLQSLSSDGAT 392
Score = 24.3 bits (51), Expect(2) = 1e-10
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 112 LAVQQVMMAGQ 144
LAVQQVMMAGQ
Sbjct: 393 LAVQQVMMAGQ 403
>sp|O70477|PKNX1_MOUSE Homeobox protein PKNOX1 OS=Mus musculus
GN=Pknox1 PE=2 SV=2
Length = 436
Score = 58.9 bits (141), Expect(2) = 2e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +3
Query: 12 NELTMSDGAVVTITAPVNMNVDSLQSLSSDGAT 110
+EL MS+GAVVTIT PVNMNVDSLQSLSSDGAT
Sbjct: 360 SELAMSEGAVVTITTPVNMNVDSLQSLSSDGAT 392
Score = 25.4 bits (54), Expect(2) = 2e-10
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 112 LAVQQVMMAGQXXXXXXXXXXXXGGNLS 195
LAVQQVMMAGQ GG L+
Sbjct: 393 LAVQQVMMAGQSEDESVDSTEDEGGALA 420
>sp|Q2HJ84|PKNX1_BOVIN Homeobox protein PKNOX1 OS=Bos taurus
GN=PKNOX1 PE=2 SV=1
Length = 436
Score = 59.3 bits (142), Expect(2) = 3e-09
Identities = 29/34 (85%), Positives = 34/34 (100%)
Frame = +3
Query: 9 SNELTMSDGAVVTITAPVNMNVDSLQSLSSDGAT 110
++ELT+S+GAVVTITAPV+MNVDSLQSLSSDGAT
Sbjct: 359 ASELTVSEGAVVTITAPVSMNVDSLQSLSSDGAT 392
Score = 21.2 bits (43), Expect(2) = 3e-09
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 112 LAVQQVMMAGQ 144
LAVQQVMMA Q
Sbjct: 393 LAVQQVMMAEQ 403
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q92105|AT2A1_RANES Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Rana esculenta GN=ATP2A1 PE=2 SV=1
Length = 994
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/25 (76%), Positives = 21/25 (84%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+Y D+ P VTFYQLSHF
Sbjct: 849 VGAAAWWFMYADDGPNVTFYQLSHF 873
>sp|P11607|AT2A2_PIG Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Sus scrofa GN=ATP2A2 PE=2 SV=1
Length = 1042
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P VTFYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVTFYQLSHF 872
>sp|Q03669|AT2A2_CHICK Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Gallus gallus GN=ATP2A2 PE=2 SV=2
Length = 1041
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P VTFYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVTFYQLSHF 872
>sp|P13585|AT2A1_CHICK Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Gallus gallus GN=ATP2A1 PE=2 SV=2
Length = 994
Score = 43.1 bits (100), Expect = 5e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWFLY ++ P +T++QL+HF
Sbjct: 849 VGAAAWWFLYAEDGPSLTYHQLTHF 873
>sp|Q64518|AT2A3_MOUSE Sarcoplasmic/endoplasmic reticulum calcium
ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=2
Length = 1038
Score = 42.7 bits (99), Expect = 7e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
VAAA WWFLY E P VTFYQL +F
Sbjct: 849 VAAATWWFLYDAEGPQVTFYQLRNF 873
>sp|P11507|AT2A2_RAT Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Rattus norvegicus GN=Atp2a2 PE=1 SV=1
Length = 1043
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|P20647|AT2A2_RABIT Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Oryctolagus cuniculus GN=ATP2A2 PE=1 SV=2
Length = 1042
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|O55143|AT2A2_MOUSE Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Mus musculus GN=Atp2a2 PE=1 SV=2
Length = 1044
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|P16615|AT2A2_HUMAN Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Homo sapiens GN=ATP2A2 PE=1 SV=1
Length = 1042
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|Q00779|AT2A2_FELCA Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Felis catus GN=ATP2A2 PE=2 SV=1
Length = 997
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|O46674|AT2A2_CANFA Sarcoplasmic/endoplasmic reticulum calcium
ATPase 2 OS=Canis familiaris GN=ATP2A2 PE=2 SV=1
Length = 997
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+ D P V+FYQLSHF
Sbjct: 848 VGAAAWWFIAADGGPRVSFYQLSHF 872
>sp|P04191|AT2A1_RABIT Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Oryctolagus cuniculus GN=ATP2A1 PE=1 SV=1
Length = 1001
Score = 42.7 bits (99), Expect = 7e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWF+Y ++ P VT++QL+HF
Sbjct: 849 VGAAAWWFMYAEDGPGVTYHQLTHF 873
>sp|P70083|AT2A1_MAKNI Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Makaira nigricans GN=atp2a1 PE=2 SV=2
Length = 996
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAWWFLY P VT+YQLSHF
Sbjct: 846 VGGAAWWFLYDSTGPAVTYYQLSHF 870
>sp|Q64578|AT2A1_RAT Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Rattus norvegicus GN=Atp2a1 PE=2 SV=1
Length = 994
Score = 42.4 bits (98), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWFLY ++ P V+++QL+HF
Sbjct: 849 VGAAAWWFLYAEDGPHVSYHQLTHF 873
>sp|Q8R429|AT2A1_MOUSE Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Mus musculus GN=Atp2a1 PE=2 SV=1
Length = 994
Score = 42.4 bits (98), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWFLY ++ P V+++QL+HF
Sbjct: 849 VGAAAWWFLYAEDGPHVSYHQLTHF 873
>sp|Q0VCY0|AT2A1_BOVIN Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 OS=Bos taurus GN=ATP2A1 PE=2 SV=1
Length = 993
Score = 42.4 bits (98), Expect = 0.001
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +2
Query: 2 VAAAAWWFLYCDESPMVTFYQLSHF 76
V AAAWWFLY ++ P VT+ QL+HF
Sbjct: 848 VGAAAWWFLYAEDGPHVTYSQLTHF 872
