miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 19 ctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatgg 78
|||||||| ||||||||||||| || ||| || ||||||||||||||||| || || |
Sbjct: 11 ctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtactagag 70
Query: 79 ttgagacacttattttgaga 98
||||||||||||||||||||
Sbjct: 71 ttgagacacttattttgaga 90
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 13 tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
||||| |||||||| |||||||||||||||| ||| || | ||||| ||||||||| ||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42
Query: 73 ttatggttgagacacttattttgagaccgagg 104
|| | ||||||||||||||||||||| ||||
Sbjct: 41 ctaggcttgagacacttattttgagacggagg 10
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 12 atactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttat 71
|||||| |||| ||| ||||||||||| |||||||| ||| ||||||| || ||||||||
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43
Query: 72 attatggttgagacacttatttt 94
| || | ||||||||||||||||
Sbjct: 42 actaagattgagacacttatttt 20
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 13 tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
||||| |||||||| ||||||| ||||| || ||| ||| | ||||| ||||||||| ||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42
Query: 73 ttatggttgagacacttattttgagaccgagg 104
|| | ||||||||||||||||| ||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagg 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tatactctctccgtcctaaaataagtgtct 40
||||||| |||||||| |||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 10 atatactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagtt 69
|||||||| |||||||| ||||||||||||| || ||| || |||| || |||||| ||
Sbjct: 104 atatactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaatt 45
Query: 70 atattatggttgagacacttattttgagaccgagg 104
| | || | ||||||||||||||||| ||| ||||
Sbjct: 44 acactaagcttgagacacttattttgggacggagg 10
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 20 tccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatggt 79
||||||| ||||||||||||| |||||| | | || || ||||||||| || || |||
Sbjct: 12 tccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgtactaaggt 71
Query: 80 tgagacacttattttgagaccgagg 104
|||||||||||||||| ||| ||||
Sbjct: 72 tgagacacttattttgggacggagg 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tatactctctccgtcctaaaataagtgtct 40
||||||| |||||||| |||||||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtct 74
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 78/93 (83%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 12 atactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttat 71
|||||| ||||||| ||||||||| |||||||||| || ||||| | | |||||||||
Sbjct: 4 atactccctccgtctcaaaataagtttcttaattttatactagctt-agtgcaaagttat 62
Query: 72 attatggttgagacacttattttgagaccgagg 104
| || | |||||||| |||||||||||| ||||
Sbjct: 63 actaagcttgagacaattattttgagacggagg 95
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 13 tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
||||| |||||||| ||||||| ||||| || ||| ||| | ||||| ||||| ||| ||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42
Query: 73 ttatggttgagacacttattttgagaccgagg 104
|| | ||||||||||||||||| ||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagg 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tatactctctccgtcctaaaataagtgtct 40
||||||| |||||||| |||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 11 tatactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagtta 70
||||||| ||||||| ||||||| ||||| || ||| ||| |||| || |||||||||
Sbjct: 103 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 44
Query: 71 tattatggttgagacacttattttgagaccgagg 104
|| || | || ||||||||||||| ||||||||
Sbjct: 43 tactaagcttaagacacttattttaggaccgagg 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 10 atatactctctccgtcctaaaataagtgtcttaa 43
||||| || ||| |||||||||||||||||||||
Sbjct: 2 atatattccctcggtcctaaaataagtgtcttaa 35
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 19 ctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatgg 78
|||||||| ||||||| ||||| || ||| ||| || |||| |||||| || ||||| |
Sbjct: 95 ctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgtattaagc 36
Query: 79 ttgagacacttattttg 95
|| ||||||||||||||
Sbjct: 35 ttaagacacttattttg 19
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 20 tccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatggt 79
||||||| ||||||||||||| || ||| || |||| || |||||| || ||||| | |
Sbjct: 12 tccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgtattaagtt 71
Query: 80 tgagacacttattttgagaccgagg 104
||||||| |||||||| ||| ||||
Sbjct: 72 tgagacagttattttgggacggagg 96
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 tatactctctccgtcctaaaataagtgtcttaa 43
|||||||||||||| |||||||||||||||||
Sbjct: 3 tatactctctccgttttaaaataagtgtcttaa 35
>RF00906;MIR1122;AAAA02012804.1/5494-5367 39946:Oryza sativa
Indica Group
Length = 128
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 catatactctctccgtcctaaaata 33
|||||||||||||||||||||||||
Sbjct: 1 catatactctctccgtcctaaaata 25
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 61 tacaaagttatattatggttgagacacttattttgagaccgagg 104
|||||||||||| || |||||||||||||||||| ||| ||||
Sbjct: 53 tacaaagttatactaaagttgagacacttattttgggacggagg 10
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 atactctctccgtcctaaaataagtgtc 39
|||||| |||||||||||||||||||||
Sbjct: 103 atactccctccgtcctaaaataagtgtc 76
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 catatactctctccgtcctaaaataagtgtc 39
||||||||| ||||||| |||||||||||||
Sbjct: 1 catatactccctccgtcttaaaataagtgtc 31
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 28 aaaataagtgtcttaattttttatcagctttaatacaaagttatattatggttgagacac 87
||||||||||||| || ||| || |||| || ||||||||| || || | ||||||||
Sbjct: 86 aaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagacag 27
Query: 88 ttattttgaga 98
|||||||||||
Sbjct: 26 ttattttgaga 16
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tatactctctccgtcctaaaataagtgtct 40
||||||| |||||||| |||||||||||||
Sbjct: 3 tatactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 atactctctccgtcctaaaataagtgtctt 41
|||||| |||||||| ||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctt 33
>RF00906;MIR1122;AAAA02021653.1/16520-16652 39946:Oryza sativa
Indica Group
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactctctccgtcctaaaata 33
||||||||||||||||||||||
Sbjct: 4 atactctctccgtcctaaaata 25
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactctctccgtcctaaaata 33
||||||||||||||||||||||
Sbjct: 4 atactctctccgtcctaaaata 25
