miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 131 bits (66), Expect = 4e-30
Identities = 96/106 (90%)
Strand = Plus / Minus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| || || ||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 106 cggagcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 47
Query: 132 atagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||||| |||||||||| | |||||||||||||||||| ||||||
Sbjct: 46 atagtacaatctctaaaaggtcttatatttaggaacggagggagta 1
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 123 bits (62), Expect = 9e-28
Identities = 95/106 (89%)
Strand = Plus / Minus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| | || ||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 109 cggagcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgtatgtagttt 50
Query: 132 atagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||||| |||||||||| | |||||||||||||||||| ||||||
Sbjct: 49 atagtacaatctctaaaaggtcttatatttaggaacggagggagta 4
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 actactccctccgttcctaaat 33
||||||||||||||||||||||
Sbjct: 2 actactccctccgttcctaaat 23
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 109 bits (55), Expect = 1e-23
Identities = 95/107 (88%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| || || |||| |||||||||||||||||||||||| ||||||| |
Sbjct: 107 cggagcaaaatgagtgaatctatattctaaaatatgtctatatacatccgaatgtagtct 48
Query: 132 a-tagtaatatctctaaaaagacttatatttaggaacggatggagta 177
| |||| | | ||||||||||||||||||||||||||||| ||||||
Sbjct: 47 actagtgaaacctctaaaaagacttatatttaggaacggagggagta 1
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 140 atctctaaaaagacttatatttaggaacggatggagta 177
||||||||||||||||||||||||||||||| ||||||
Sbjct: 127 atctctaaaaagacttatatttaggaacggagggagta 164
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 109 bits (55), Expect = 1e-23
Identities = 94/107 (87%)
Strand = Plus / Plus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| || || || ||||||||||| |||||||| ||||| ||||||||
Sbjct: 61 cggagcaaaatgagtgaatctacactctaaaatacgtctatattcatccgtatgtagtcc 120
Query: 132 atagtaatatctctaaaaagacttatatttaggaacggatggagtat 178
||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 atattcaaatctctaaaaagacttatatttaggaacggagggagtat 167
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 140 atctctaaaaagacttatatttaggaacggatggagta 177
|||||||||||||||||||||||||||| || ||||||
Sbjct: 42 atctctaaaaagacttatatttaggaacagagggagta 5
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 101 bits (51), Expect = 3e-21
Identities = 94/107 (87%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| || || || |||||||| ||||||||||||||||| ||||||||
Sbjct: 58 cggagcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtatgtagtcc 117
Query: 132 a-tagtaatatctctaaaaagacttatatttaggaacggatggagta 177
| |||| | ||||||| ||||||||||||||||||||||| ||||||
Sbjct: 118 attagtgaaatctctacaaagacttatatttaggaacggagggagta 164
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 147 aaaagacttatatttaggaacggatggagta 177
|||||||||||||||||||||||| ||||||
Sbjct: 31 aaaagacttatatttaggaacggagggagta 1
Score = 46.1 bits (23), Expect = 2e-04
Identities = 36/40 (90%), Gaps = 4/40 (10%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaat----gtctttgtagagatt 48
||||||||||||||||||||| |||||||||||||||
Sbjct: 165 ctactccctccgttcctaaatataagtctttgtagagatt 126
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 99.6 bits (50), Expect = 1e-20
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 72 cggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttt 131
||||||||||||| || ||||| | | |||||||| ||| |||||||| ||||||||||
Sbjct: 107 cggagcaaaatgagtgaatttacatcccaaaatatgactacatacatccgtatgtagttt 48
Query: 132 atagtaatatctctaaaaagacttatatttaggaacggatggagta 177
||||| | |||||||||| | |||||||||||||||||| ||||||
Sbjct: 47 atagtgagatctctaaaaggtcttatatttaggaacggagggagta 2
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 122 tatgtagtttatagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||||||| |||||| | || | ||||| | |||||||||||||||||| ||||||
Sbjct: 108 tatgtagtctatagtgaaatttgtaaaaggtcttatatttaggaacggagggagta 163
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 85.7 bits (43), Expect = 2e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 92 tatactctaaaatatgtctatatacatccctatgtagtttatagtaatatctctaaaaag 151
||||| ||||||||||||||||||||||| ||||||||| ||||| || |||||| |
Sbjct: 81 tataccctaaaatatgtctatatacatccgtatgtagttcatagtgtaatacctaaaagg 140
Query: 152 acttatatttaggaacggatggagtat 178
|||||||||||||||||| |||||||
Sbjct: 141 tcttatatttaggaacggagggagtat 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 122 tatgtagtttatagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||||||| |||||| || ||||||| | |||||||||||||||||| ||||||
Sbjct: 60 tatgtagtccatagtagaatttctaaaaggtcttatatttaggaacggagggagta 5
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 140 atctctaaaaagacttatatttaggaacggatggagtat 178
||||||||||||||||||||||||||||||| |||||||
Sbjct: 42 atctctaaaaagacttatatttaggaacggagggagtat 4
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 140 atctctaaaaagacttatatttaggaacgga 170
|||||||||| ||||||||||||||||||||
Sbjct: 78 atctctaaaaggacttatatttaggaacgga 108
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 67.9 bits (34), Expect = 5e-11
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 92 tatactctaaaatatgtctatatacatccctatgtagtttatagtaatatctctaaaaag 151
||||||||||||| |||| |||||||| ||||| || ||||| | ||||||| ||||
Sbjct: 78 tatactctaaaatgcatctacatacatccgtatgtggtccatagtgaaatctctacaaag 137
Query: 152 acttatatttaggaacggatggagta 177
||||||||||||||| ||| ||||||
Sbjct: 138 acttatatttaggaatggagggagta 163
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 148 aaagacttatatttaggaacggatggagtat 178
||||||||||||||||||||||| |||||||
Sbjct: 31 aaagacttatatttaggaacggagggagtat 1
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 67.9 bits (34), Expect = 5e-11
Identities = 90/106 (84%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 73 ggagcaaaatgaatggatttatactctaaaatatgtctatatacatccctatgtagttta 132
|||||||||||| || || | |||||||| ||||||||||||||||| ||||||||
Sbjct: 61 ggagcaaaatgagtgaatctgtactctaag-tatgtctatatacatccgtatgtagtccc 119
Query: 133 -tagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||| | | |||||||||||||||||||||||||||| ||||||
Sbjct: 120 ctagtgaaacttctaaaaagacttatatttaggaacggagggagta 165
Score = 63.9 bits (32), Expect = 7e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 140 atctctaaaaagacttatatttaggaacggatggagtatt 179
||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 40 atctctaaaaagacttacatttaggaacggagggagtatt 1
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaatgt 35
||||||||||||||||||||||
Sbjct: 3 tactccctccgttcctaaatgt 24
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 140 atctctaaaaagacttatatttaggaacggatggagta 177
||||||| ||||||||||||||||||||||| ||||||
Sbjct: 42 atctctacaaagacttatatttaggaacggagggagta 5
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 122 tatgtagtttatagtaatatctctaaaaagacttatatttaggaacggatggagta 177
|||||||| ||||| | ||||||| | ||||||||||||||||||||| ||||||
Sbjct: 106 tatgtagtccatagtgaaatctctacagagacttatatttaggaacggagggagta 161
Score = 52.0 bits (26), Expect = 3e-06
Identities = 39/43 (90%), Gaps = 4/43 (9%)
Strand = Plus / Plus
Query: 14 tactccctccgttcctaaat----gtctttgtagagattccac 52
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttgtagagattccac 47
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 122 tatgtagtttatagtaatatctctaaaaagacttatatttaggaacggatggagta 177
||||| || |||||| | |||||| ||||||||||||||||||||||| ||||||
Sbjct: 60 tatgtggtctatagtgaaatctctccaaagacttatatttaggaacggagggagta 5
Score = 52.0 bits (26), Expect = 3e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 108 tctatatacatccctatgtagtttatagtaatatctctaaaaagacttatatttaggaac 167
||||||||||||| ||||| || | ||| | || |||| |||||||||||||||||||
Sbjct: 96 tctatatacatccgtatgtggtccacagtgaaatatctacgaagacttatatttaggaac 155
Query: 168 ggatggagta 177
||| ||||||
Sbjct: 156 ggagggagta 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tactactccctccgttcctaaat 33
|||||||||||||||||||||||
Sbjct: 2 tactactccctccgttcctaaat 24
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 147 aaaagacttatatttaggaacggatggagtat 178
|||||||||||||||||||||||| |||||||
Sbjct: 121 aaaagacttatatttaggaacggagggagtat 152
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 148 aaagacttatatttaggaacggatggagtat 178
||||||||||||||||||||||| |||||||
Sbjct: 34 aaagacttatatttaggaacggagggagtat 4
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 54.0 bits (27), Expect = 7e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 148 aaagacttatatttaggaacggatggagtat 178
||||||||||||||||||||||| |||||||
Sbjct: 109 aaagacttatatttaggaacggagggagtat 139
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 148 aaagacttatatttaggaacggatggagtatt 179
||||||||||||||||||| ||| ||||||||
Sbjct: 34 aaagacttatatttaggaaaggagggagtatt 3
>RF01058;MIR806;AAAA02015256.1/6210-6451 39946:Oryza sativa Indica
Group
Length = 242
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctactccctccgttcctaaatgt 35
|||||||||||||||||||||||
Sbjct: 242 ctactccctccgttcctaaatgt 220
>RF01058;MIR806;AAAA02033301.1/5869-5628 39946:Oryza sativa Indica
Group
Length = 242
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 tactccctccgttcctaaatgt 35
||||||||||||||||||||||
Sbjct: 241 tactccctccgttcctaaatgt 220
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa Japonica
Group
Length = 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 153 cttatatttaggaacggatggagtat 178
|||||||||||||||||| |||||||
Sbjct: 29 cttatatttaggaacggagggagtat 4
