miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 149 bits (75), Expect = 9e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 16 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataact 75
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttgtctaacctctttttgagataact 60
Query: 76 atacagtctactgtctttcccaa 98
||||| |||||||||||||||||
Sbjct: 61 atacaatctactgtctttcccaa 83
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 95.6 bits (48), Expect = 1e-19
Identities = 70/75 (93%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 22 tgaggtagtagattgaatagttgtggggttg-tgtaacctctttttgagataactataca 80
|||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggttcatgt--cctccttttgagataactataca 64
Query: 81 gtctactgtctttcc 95
|||||||||||||||
Sbjct: 65 gtctactgtctttcc 79
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 95.6 bits (48), Expect = 1e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 16 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctcttt-ttgagataac 74
|||||||||||||||||||||||||||||||||||| | |||||||| || || ||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttttccgacctctttcttcagttaac 60
Query: 75 tatacagtctactgtctttcccaa 98
|||||| |||||||||||||||||
Sbjct: 61 tatacaatctactgtctttcccaa 84
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 91.7 bits (46), Expect = 2e-18
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 22 tgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactatacag 81
|||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtt-tacatcctccttttgagataactatacaa 65
Query: 82 tctactgtctttcc 95
||||||||||||||
Sbjct: 66 tctactgtctttcc 79
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 83.8 bits (42), Expect = 4e-16
Identities = 71/79 (89%), Gaps = 5/79 (6%)
Strand = Plus / Plus
Query: 19 ggctgaggtagtagattgaatagttgtggggttgtgtaa--cctctttttgagataacta 76
||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtt---taagtcctccctctgagataacta 60
Query: 77 tacagtctactgtctttcc 95
|||||||||||||||||||
Sbjct: 61 tacagtctactgtctttcc 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 77.8 bits (39), Expect = 3e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 20 gctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactatac 79
|||||||||||||||||||||||||||| | | | |||||| ||||||||||||||||
Sbjct: 5 gctgaggtagtagattgaatagttgtggag-tataaaacctccctttgagataactatac 63
Query: 80 agtctactgtctttc 94
| |||||||||||||
Sbjct: 64 aatctactgtctttc 78
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 16 tggggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataact 75
|||||||||||||||||||||||||||||||| | || |||| | ||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 60
Query: 76 atacagtctactgtctttcc 95
||||| ||||||||||||||
Sbjct: 61 atacaatctactgtctttcc 80
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 19 ggctgaggtagtagattgaatagttgtggggt 50
||||||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggt 35
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 66 tgagataactatacagtctactgtctttccc 96
|||||||||||||||||||||||||||||||
Sbjct: 51 tgagataactatacagtctactgtctttccc 81
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttccca 97
|||||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttccca 80
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 60.0 bits (30), Expect = 6e-09
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 18 gggctgaggtagtagattgaatagttgtggggttgtgtaacctctttttgagataactat 77
||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||||
Sbjct: 3 gggctgaggtagtagattgtatagttgtgaggttgt-acacctc-ctctgagataactat 60
Query: 78 acagtctactgtctttcc 95
|| ||||||||||||||
Sbjct: 61 gcaatctactgtctttcc 78
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttc 94
||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttcc 95
|||||||||||||| ||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttcc 95
|||||||||||||| ||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttcc 78
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 64 tttgagataactatacagtctactgtctttcc 95
|||| |||||||||||| ||||||||||||||
Sbjct: 45 tttgggataactatacaatctactgtctttcc 76
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttc 94
||||||||||||||| ||||||||||||
Sbjct: 49 gagataactatacagcctactgtctttc 76
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttc 94
||||||||||||||| ||||||||||||
Sbjct: 50 gagataactatacagcctactgtctttc 77
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 67 gagataactatacagtctactgtctttc 94
|||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 agataactatacagtctactgtctttcc 95
||||||||||||| ||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcc 78
