miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34311_dre-mir-142a:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 63 tcctacttt 71
|||||||||
Sbjct: 64 tcctacttt 72
>34312_dre-mir-142a:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 63 tcctacttt 71
|||||||||
Sbjct: 64 tcctacttt 72
>34604_fru-mir-142b:mirbase
Length = 86
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
||||||| |||| |||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 63 tcctacttt 71
|||||||||
Sbjct: 61 tcctacttt 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 3 acagtgcagtcatccataaagtagaaagcactac 36
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>34750_tni-mir-142a:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
Query: 63 tcctacttt 71
|||||||||
Sbjct: 63 tcctacttt 71
>34603_fru-mir-142a:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
Query: 63 tcctacttt 71
|||||||||
Sbjct: 61 tcctacttt 69
>31499_oan-mir-142:mirbase
Length = 110
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 agacagtgcagtcatccataaagtagaaagcactactaa 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 13 agacagtgcagtcatccataaagtagaaagcactactaa 51
>34313_dre-mir-142b:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
|||||||||||| ||||||||||| ||||||||||||| || || ||||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 63 tcctacttt 71
|||||||||
Sbjct: 61 tcctacttt 69
>34751_tni-mir-142b:mirbase
Length = 86
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaaccattcaacccagtgtagtgtt 62
||||||| |||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtt 60
Query: 63 tcctacttt 71
|||||||||
Sbjct: 61 tcctacttt 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 3 acagtgcagtcatccataaagtagaaagcactac 36
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>25962_gga-mir-142:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaaac 41
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaaac 40
>25963_gga-mir-142:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaaac 41
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaaac 40
>27746_mml-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>27747_mml-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>28461_hsa-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>28462_hsa-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>30234_ptr-mir-142:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>30845_ppy-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>30846_ppy-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>32747_rno-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>32748_rno-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>33228_bta-mir-142:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gacagtgcagtcatccataaagtagaaagcactactaa 39
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa 38
>26473_tgu-mir-142:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 7 tgcagtcatccataaagtagaaagcactactaaac 41
|||||||| ||||||||||||||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaac 35
>33991_ssc-mir-142:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 gtgcagtcatccataaagtagaaagcactactaa 39
||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa 34
>33992_ssc-mir-142:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 gtgcagtcatccataaagtagaaagcactactaa 39
||||||||| ||||||||||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa 34
>27390_mdo-mir-142:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gcagtcatccataaagtagaaagcactactaa 39
||||||| ||||||||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaa 32
>25666_xla-mir-142:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactacta 38
|||||||| || |||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactacta 35
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactacta 38
|||||||| || |||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactacta 35
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactacta 38
|||||||| || |||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactacta 35
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactacta 38
|||||||| || |||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactacta 35
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactacta 38
|||||||| || |||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactacta 35
>26716_cfa-mir-142:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 2 ccataaagtagaaagcactactaa 25
>27041_eca-mir-142:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>27042_eca-mir-142:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31874_mmu-mir-142:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31875_mmu-mir-142:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
