miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 95.6 bits (48), Expect = 1e-19
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctga 70
|||||||||||||||||||||||||||||||| | || || ||||||||| ||||| |
Sbjct: 4 gtactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttag 63
Query: 71 taaaaaattaagacacttattttaggacggag 102
|| ||| |||||||||||||||| ||||||||
Sbjct: 64 tacaaagttaagacacttattttgggacggag 95
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 9 aggtactccctccgtctcaaaataagtgtct 39
|||||||||||||||| ||||||||||||||
Sbjct: 104 aggtactccctccgtcccaaaataagtgtct 74
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||| |||| ||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct: 101 tactcactccatctcaaaataagtgtctcaactctagtacaactttgtattaaagctagt 42
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||||||||||| ||||||||
Sbjct: 41 acaaagttgagacacttattttgggacggag 11
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataagtgtctcaac 43
||||||||||| ||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| ||||||||||||||||| |||| || ||||||||| ||||| | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaat 64
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||| ||||||| ||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggag 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| |||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaac 70
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| |||||||||||||||||||||| || ||||||||| || || | |
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagt 42
Query: 72 aaaaaattaagacacttattttaggacgga 101
|||||| ||||||||||||| |||||||
Sbjct: 41 gtaaaattgagacacttattttgggacgga 12
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtctcaa 42
||||||| |||||| |||||||||||||||||
Sbjct: 4 gtactccttccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 27 aaaataagtgtctcaaccttaatataactttgtattaaagctgataaaaaattaagacac 86
|||||||||||||||| |||| ||||||||| || ||||||| ||| |||||||| ||||
Sbjct: 20 aaaataagtgtctcaatcttagtataactttatactaaagctaatacaaaattaacacac 79
Query: 87 ttattttaggacggag 102
||||||| ||| ||||
Sbjct: 80 ttattttgggatggag 95
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 79.8 bits (40), Expect = 7e-15
Identities = 80/92 (86%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctga 70
||||||||||||||||||||||| |||||||| |||| |||||||||| | | |||||
Sbjct: 101 gtactccctccgtctcaaaataattgtctcaagcttagtataactttgcact-aagctag 43
Query: 71 taaaaaattaagacacttattttaggacggag 102
|| |||||||||| ||||||||| |||||||
Sbjct: 42 tataaaattaagaaacttattttgagacggag 11
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagt 28
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| ||||||||||||||||| |||| | ||| |||||| || |||| |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64
Query: 72 aaaaaattaagacacttattttaggacggagaaagtatat 111
| ||| || ||||||||||||| |||||||| |||||||
Sbjct: 65 acaaagttgagacacttattttgggacggagggagtatat 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| ||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/91 (85%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctga 70
|||||||||||||| |||||||| |||||||| ||||||| || |||||| || ||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctag 43
Query: 71 taaaaaattaagacacttattttaggacgga 101
|| ||| || ||||||||||||| |||||||
Sbjct: 42 tataaagttgagacacttattttgggacgga 12
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||| |||||| ||||||||||||||||||
Sbjct: 5 tactccatccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| ||||||||||||||||| |||| || ||| ||||| ||||| | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaat 64
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||| ||||||| ||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggag 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| |||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaac 70
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
|||||||||||| |||||||||||||| || ||||||| || |||||| |||| || ||
Sbjct: 5 tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64
Query: 72 aaaaaattaagacacttattttaggacggagaaagta 108
| ||| || ||||| ||||||| |||||||| |||||
Sbjct: 65 acaaagttgagacagttattttgggacggaggaagta 101
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 69.9 bits (35), Expect = 7e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataagtgtctcaaccttaatataactttgta 60
||||||||||| |||||||||||||||||| ||| ||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttagtataactttgta 53
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||| |||||||| ||||||||||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaac 58
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
|||||||||| ||||||||||| |||||||| |||| || ||||||||| || |||| |
Sbjct: 5 tactccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagctagt 64
Query: 72 aaaaaattaagacacttatttt 93
| ||| || |||||||||||||
Sbjct: 65 acaaagttgagacacttatttt 86
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaacctta 47
||||||||||||| ||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaacctta 40
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctca 41
||||||||||||| ||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca 71
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctga 70
|||||||||||||| |||||||| ||||| || |||| ||||| ||| || |||||||
Sbjct: 102 gtactccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctag 43
Query: 71 taaaaaattaagacacttatttt 93
|| ||| |||||||| |||||||
Sbjct: 42 tacaaagttaagacagttatttt 20
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataactttgta 60
||||||||||||||||||||||||||||| || |||| || || ||||||
Sbjct: 4 gtactccctccgtctcaaaataagtgtcttaatcttagtacaattttgta 53
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||| |||||||||||| |||||||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaac 70
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataagtgtctcaaccttaatataactttg 58
|||||| |||| |||||||||||||||||||||| || |||||||
Sbjct: 7 ctcccttcgtcccaaaataagtgtctcaaccttagtacaactttg 51
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaa 42
||||||||||||| |||||||| ||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaa 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 37 tctcaaccttaatataactttgtattaaagctgataaaaaattaagacacttattttagg 96
||||||||||| || ||||||||| ||||| | || ||| || ||||| ||||||| ||
Sbjct: 78 tctcaaccttagtacaactttgtactaaagttagtacaaacttgagacagttattttggg 137
Query: 97 acggag 102
||||||
Sbjct: 138 acggag 143
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||||||||||||||||||| |||||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaac 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 27 aaaataagtgtctcaaccttaatataactttgtattaaagctgataaaaaattaagacac 86
||||||||||||| || |||| || ||||||||| || |||| ||| ||| || |||||
Sbjct: 20 aaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttgagacag 79
Query: 87 ttattttaggacggag 102
||||||| |||||||
Sbjct: 80 ttattttgagacggag 95
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||||||||||| ||||||||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaac 36
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||||||||||||||||||| |||||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaac 36
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||||||||||||||||||||| |||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaac 70
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataacttt 57
|||||||||||||| |||||||| | |||||| |||| || ||||||
Sbjct: 4 gtactccctccgtcccaaaataactttctcaaacttagtacaacttt 50
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| |||||||| ||||| || |||| ||||| ||| ||||| | || |
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagt 64
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||| ||||||| ||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggag 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| |||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaac 70
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 75/91 (82%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
|||||||||||| |||||||| | |||||| |||| || ||||||||| || |||| |
Sbjct: 101 tactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagt 42
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||||||||||| | ||||||
Sbjct: 41 acaaatttgagacacttattttggaacggag 11
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaa 42
|||||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaa 35
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 aggtactccctccgtctcaaaataagtgtctcaa 42
|||||||||||||||| ||||||||||| |||||
Sbjct: 114 aggtactccctccgtcccaaaataagtgactcaa 81
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctca 41
|||||||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctca 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtctcaaccttaatataacttt 57
|||||||||||||| |||||||| | |||||| |||| || ||||||
Sbjct: 4 gtactccctccgtcccaaaataactttctcaaacttagtacaacttt 50
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtctcaac 43
||||||||||| || ||||||||||||||||||
Sbjct: 102 gtactccctccatcccaaaataagtgtctcaac 70
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtgtctcaac 43
|||||||||||||| |||||||| |||||||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaac 70
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctc 40
||||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctc 33
>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
Indica Group
Length = 167
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aaggtactccctccgtctcaaaata 32
|||||||||||||||||||||||||
Sbjct: 1 aaggtactccctccgtctcaaaata 25
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| ||||||||||| ||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaac 69
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtgtc 38
||||||||||||| ||||||||||||||
Sbjct: 4 gtactccctccgtatcaaaataagtgtc 31
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||||||||| ||||||||| |||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaac 70
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| |||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaac 70
Score = 46.1 bits (23), Expect = 1e-04
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||||||||||| |||||||| ||||| || |||| ||||| ||| || || | || |
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagt 64
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| || ||||| ||||||| ||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggag 95
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
|||||||||| || ||||||||||||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaac 77
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaac 43
||||||||||||| ||||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaac 36
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagt 35
||||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataagt 93
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataag 34
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataag 24
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctcaa 42
||||||||||||| ||||||||||| |||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaa 82
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtcttaaaataagtgtc 31
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaa 42
||||| ||||||||||||||||||| |||||
Sbjct: 5 tactctctccgtctcaaaataagtgactcaa 35
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||| |||||| | ||||||||||||| || |||| ||||| ||| || || ||||
Sbjct: 5 tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 64
Query: 72 aaaaaattaagacacttattttaggacggag 102
| ||| |||||||| ||||||| ||||||||
Sbjct: 65 acaaagttaagacaattattttgggacggag 95
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtc 38
||||||||||||| |||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 94 gtactccctccgtctcaaaataa 72
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaataagtg 36
|||||||||||||| |||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgt 37
||||||||||||| ||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF00906;MIR1122;AC148487.14/40672-40806 3880:Medicago truncatula
(barrel medic)
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtactccctccgtctcaaaata 32
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaata 25
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataagtgtctca 41
|||||||||||| ||||||||||||||||
Sbjct: 130 tactccctccgttccaaaataagtgtctca 101
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataagtgtctcaaccttaatataactttgtattaaagctgat 71
||||| ||||||| |||||||| |||||||| | || || ||||||||| || | || |
Sbjct: 5 tactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagt 64
Query: 72 aaaaaattaagacacttatttt 93
| ||| || |||||||||||||
Sbjct: 65 acaaagttgagacacttatttt 86
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 gtactccctccgtctcaaaataagtg 36
|||||||||||||| |||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataa 33
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
