miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 8 gttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagt 46
Query: 68 tgtactaagcttaagacacttattttaggaccgagggaatatata 112
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 tgtactaagcttaagacacttattttaggaccgagggaatatata 1
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 133 bits (67), Expect = 6e-31
Identities = 91/99 (91%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42
Query: 72 ctaagcttaagacacttattttaggaccgagggaatata 110
|||||||| ||||||||||||| |||| |||||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagtata 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| ||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 125 bits (63), Expect = 1e-28
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42
Query: 72 ctaagcttaagacacttattttaggaccgagggaatata 110
||| ||| |||||||||||||| | || |||||| ||||
Sbjct: 41 ctacgctcaagacacttattttggaacggagggagtata 3
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 125 bits (63), Expect = 1e-28
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| |||||||| |||||||||||||||||| || |||||||| ||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42
Query: 72 ctaagcttaagacacttattttaggaccgagggaatata 110
|||||||| ||||||||||||| |||| |||||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagtata 3
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| ||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 123 bits (62), Expect = 5e-28
Identities = 77/82 (93%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42
Query: 72 ctaagcttaagacacttatttt 93
||||| ||||||||||||||||
Sbjct: 41 ctaagattaagacacttatttt 20
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
|||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtctcaaaataagtgtct 32
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||| |||||||| |||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42
Query: 72 ctaagcttaagacacttatttt 93
|||||||||||||||||||||
Sbjct: 41 ttaagcttaagacacttatttt 20
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 69
||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||| ||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaatta 44
Query: 70 tactaagcttaagacacttattttaggaccgaggga 105
||||||||| ||||||||||||| |||| ||||||
Sbjct: 43 cactaagcttgagacacttattttgggacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 109 bits (55), Expect = 8e-24
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| ||||||||||||||||||||| || ||| ||||||| ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttat 43
Query: 71 actaagcttaagacacttattttaggaccgaggga 105
||||||||||||||| ||||||| |||| ||||||
Sbjct: 42 actaagcttaagacagttattttgggacggaggga 8
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 84/94 (89%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||| || |||||||| ||||||||||||||| || |||||||||||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 72 ctaagcttaagacacttattttaggaccgaggga 105
||||||| |||||||||||||| |||| ||||||
Sbjct: 41 ctaagctcaagacacttattttgggacggaggga 8
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 63/66 (95%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgta 42
Query: 72 ctaagc 77
||||||
Sbjct: 41 ctaagc 36
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 83/93 (89%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| ||||||| |||||| ||||||||| |||||| ||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42
Query: 72 ctaagcttaagacacttattttaggaccgaggg 104
|||||||||||||||||||||| |||| |||||
Sbjct: 41 ctaagcttaagacacttattttgggacggaggg 9
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||
Sbjct: 2 ttatactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagtt 61
Query: 69 gtactaagcttaagacacttatttt 93
||||||||||| ||| | |||||||
Sbjct: 62 gtactaagcttgagatagttatttt 86
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| ||||||||||||||||||||| || ||| |||| || ||| || |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttat 43
Query: 71 actaagcttaagacacttattttaggaccgaggga 105
||||||||||||||| ||||||| |||| ||||||
Sbjct: 42 actaagcttaagacagttattttgggacggaggga 8
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct 39
||||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| || ||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42
Query: 72 ctaagcttaagacacttatttta 94
|||||||||||||||||||||||
Sbjct: 41 ctaagcttaagacacttatttta 19
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 99.6 bits (50), Expect = 8e-21
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41
Query: 72 ctaagcttaagacacttatttt 93
| ||| || ||||| |||||||
Sbjct: 40 caaag-ttgagacagttatttt 20
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||||||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataactgtctcaactttgta 42
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 99.6 bits (50), Expect = 8e-21
Identities = 74/82 (90%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||| |||||||| ||||| ||||||||| || || |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42
Query: 72 ctaagcttaagacacttatttt 93
||| |||| |||||||||||||
Sbjct: 41 ctaggcttgagacacttatttt 20
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 95.6 bits (48), Expect = 1e-19
Identities = 88/100 (88%), Gaps = 1/100 (1%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
|||||||||||||| |||||||| ||||||| ||||||| || |||||||| ||| ||||
Sbjct: 101 atactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgt 43
Query: 71 actaagcttaagacacttattttaggaccgagggaatata 110
|||||| || ||||||||||||| |||| |||||| ||||
Sbjct: 42 actaaggttgagacacttattttgggacggagggagtata 3
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 ttatactccctccgtctcaaaataactgtctcaac 43
|||||||||||||||| |||||||| |||||||||
Sbjct: 2 ttatactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
|||||||||||||||| ||||||||||||||||| |||||| || || ||||||||||||
Sbjct: 152 ttatactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagtt 93
Query: 69 gtactaag 76
||||||||
Sbjct: 92 gtactaag 85
Score = 61.9 bits (31), Expect = 2e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 36 gtctcaactttgtattagctctagtacaaagttgtactaagcttaagacacttattttag 95
|||||||||||||| || | |||| ||||||||||||||| || ||||||||||||| |
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 96 gac 98
|||
Sbjct: 17 gac 15
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 26 caaaataactgtctcaactttgtattagctctagtacaaagttgtactaagcttaagaca 85
|||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 87 caaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagaca 28
Query: 86 cttatttt 93
|||||||
Sbjct: 27 gttatttt 20
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgtctcaa 42
|||||||||||| ||||||||||||||||||||
Sbjct: 3 tatactccctccatctcaaaataactgtctcaa 35
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 95.6 bits (48), Expect = 1e-19
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||| || |||||||| ||||||||||||||| || || ||||||||||||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50
Query: 71 actaagcttaagacac 86
|||||||| |||||||
Sbjct: 49 actaagctcaagacac 34
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 93.7 bits (47), Expect = 5e-19
Identities = 86/99 (86%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||| |||||| |||||||| |||||||| ||| | || ||||||||||||||||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 72 ctaagcttaagacacttattttaggaccgagggaatata 110
||||| || ||||||||||||| |||| |||||| ||||
Sbjct: 65 ctaaggttgagacacttattttgggacggagggagtata 103
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaac 43
||||||||||||||| |||||||| |||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 93.7 bits (47), Expect = 5e-19
Identities = 78/87 (89%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||| || |||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgta 42
Query: 72 ctaagcttaagacacttattttaggac 98
||| |||| ||||| ||||||| ||||
Sbjct: 41 ctaggcttgagacagttattttgggac 15
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaa 42
|||||| ||||||| |||||||||||||||||
Sbjct: 4 atactcactccgtcccaaaataactgtctcaa 35
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||||||||||||||| | |||||||||| | ||||||||||| |||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgta 42
Query: 72 ctaagcttaagacacttattttaggaccgaggga 105
||||| || ||| | ||||||| |||| ||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgtact 73
||||||||||| |||||||| ||||||||||||||| ||||| || ||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtact 66
Query: 74 aagcttaagacacttatttt 93
| || |||||||||||||
Sbjct: 67 agagttgagacacttatttt 86
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||| |||||| |||||||| |||||||||||| || ||||| ||||||||| ||||
Sbjct: 4 atactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgt 63
Query: 71 actaagcttaagacacttattttaggaccgaggga 105
| |||| || ||||| ||||||| |||| ||||||
Sbjct: 64 attaagtttgagacagttattttgggacggaggga 98
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 87/102 (85%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||| || |||||||| ||| | || |||||||||||| ||||| |||||| |
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43
Query: 71 actaagcttaagacacttattttaggaccgagggaatatata 112
|||||| || ||||||||||||||| || || ||| ||||||
Sbjct: 42 actaagattgagacacttattttagaacggaaggagtatata 1
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
|||||||||||||||||||||| | ||||| |||| | ||||||||||| |||||||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgta 42
Query: 72 ctaagcttaagacacttattttaggaccgaggga 105
||||| || ||| | ||||||| |||| ||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
||||||||||||| |||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 77.8 bits (39), Expect = 3e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgta 64
Query: 72 ctaagcttaagacacttattttaggac 98
||||| || ||| | ||||||| ||||
Sbjct: 65 ctaagtttgagaaagttattttgggac 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtc 38
||||||||||||| |||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 69.9 bits (35), Expect = 7e-12
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 70
||||||||||||||||||||||| | ||| || ||| || ||||| |||| ||||||| |
Sbjct: 4 atactccctccgtctcaaaataagtttcttaattttatactagct-tagtgcaaagttat 62
Query: 71 actaagcttaagacacttatttt 93
||||||||| ||||| |||||||
Sbjct: 63 actaagcttgagacaattatttt 85
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||||||||| ||||||||
Sbjct: 100 tactccctccgtctcaaaataattgtctcaa 70
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 71
||||||||| || |||||||||||||| ||||||||| ||||| || || ||| || ||
Sbjct: 5 tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64
Query: 72 ctaagcttaagacacttatttt 93
||||| |||||||| |||||||
Sbjct: 65 ctaagtttaagacatttatttt 86
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 63.9 bits (32), Expect = 4e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtatta 52
||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 105 ttatacttcctccgtctcaaaataactgtcttaactttatatta 62
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgt 37
|||||||||||||| |||||||||||||
Sbjct: 3 tatactccctccgtttcaaaataactgt 30
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagtt 68
||||||| ||||||| |||||||| || |||||||||||| || || ||||||||||||
Sbjct: 93 ttatacttcctccgtttcaaaatagatgactcaactttgtactaactttagtacaaagtt 34
Query: 69 g 69
|
Sbjct: 33 g 33
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||| |||||||| || ||||||||||||
Sbjct: 103 ttatactccctccgtcccaaaataagtgactcaactttgta 63
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||| |||||||| || ||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaactttgta 42
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 69
||||||||||||| |||| ||| || ||||||||| || || || |||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagttg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgta 49
||||||||||| ||| |||||||| || ||||||||||||
Sbjct: 3 tatactccctctgtcccaaaataagtgactcaactttgta 42
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaactttgta 49
|||||||||||||||| | |||||| || ||||||||||||
Sbjct: 106 ttatactccctccgtcccgaaataagtgactcaactttgta 66
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 ctccctccgtctcaaaataactgtctcaacttt 46
||||||||||| |||||||| ||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttt 39
Score = 50.1 bits (25), Expect = 7e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 57 tagtacaaagttgtactaagcttaagacacttattttaggaccgaggga 105
|||||||||||| |||||| || ||||||||||||| |||| ||||||
Sbjct: 56 tagtacaaagttatactaaagttgagacacttattttgggacggaggga 8
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactt 45
|||||| |||||||| |||||||| |||||||||||
Sbjct: 91 tatacttcctccgtcccaaaataagtgtctcaactt 56
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 69
|||||||||||| | ||||||| || |||||||||||| || || |||||||||||||
Sbjct: 92 tatactccctccattccaaaatagatgactcaactttgtactaactttagtacaaagttg 33
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaataa 33
||||||||||||||||||||||||
Sbjct: 118 tatactccctccgtctcaaaataa 95
>RF00906;MIR1122;AAAA02019740.1/10862-10702 39946:Oryza sativa
Indica Group
Length = 161
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaata 32
||||||||||||||||||||||||
Sbjct: 160 ttatactccctccgtctcaaaata 137
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 1 atactccctccgtctcaaaataa 23
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtct-caactttgta 49
||||||||||||| |||||||| ||||| ||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctccaactttgta 43
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 atactccctccgtctcaaaataa 33
|||||||||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaataa 26
>RF00906;MIR1122;AAAA02000585.1/2941-3070 39946:Oryza sativa Indica
Group
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tatactccctccgtctcaaaata 32
|||||||||||||||||||||||
Sbjct: 128 tatactccctccgtctcaaaata 106
>RF00906;MIR1122;AC174352.7/5727-5571 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 atactccctccgtctcaaaata 32
||||||||||||||||||||||
Sbjct: 154 atactccctccgtctcaaaata 133
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 12 tactccctccgtctcaaaataactgtctcaactttgta 49
||||||||||||| |||| ||| || ||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaactttgta 42
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtctcaa 42
|||||||||||||||| |||||||| || |||||
Sbjct: 115 ttatactccctccgtcccaaaataagtgactcaa 82
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 ttatactccctccgtctcaaaataactgtc 38
|||||||||||||||| |||||||| ||||
Sbjct: 105 ttatactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AC130607.2/121928-122037 39947:Oryza sativa
Japonica Group
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tatactccctccgtctcaaaat 31
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtctcaaaat 24
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 tactccctccgtctcaaaataa 33
||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataa 72
