miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51802_ptc-miR481b:pmrd
Length = 220
Score = 79.8 bits (40), Expect = 1e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 5 catttcaacctaaaatcttaagctgttagatgaggtcccatgatatgatttatattattc 64
|||||||||| || | ||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct: 207 catttcaacccaatagcttaagctgttaggtgaggttccagaatatgatttatattattc 148
Query: 65 tctaacac 72
||||||||
Sbjct: 147 tctaacac 140
>51801_ptc-miR481a:pmrd
Length = 93
Score = 69.9 bits (35), Expect = 1e-12
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 21 cttaagctgttagatgaggtcccatgatatgatttatattattctctaaca 71
|||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct: 90 cttaagctgttaagtgaggtcctaggatatgatttatattattctctaaca 40
>51804_ptc-miR481d:pmrd
Length = 141
Score = 63.9 bits (32), Expect = 9e-11
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 21 cttaagctgttagatgaggtcccatgatatgatttatattattctctaacac 72
||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 136 cttaagctgttaggtgaggtcttagaatatgatttatattattctctaacac 85
>53253_ptc-miRf11431-akr:pmrd
Length = 114
Score = 60.0 bits (30), Expect = 1e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 8 ttcaacctaaaatcttaagctgttagatgaggtcccatgatatgatttatatta 61
||||||| |||| |||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 54 ttcaacccaaaagtttaagctgttaggtgaggtcccaagatatgattgatatta 1
>54258_ptc-miRf12436-akr:pmrd
Length = 165
Score = 54.0 bits (27), Expect = 9e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 21 cttaagctgttagatgaggtcccatgatatgatttatattattctctaaca 71
||||||||||||| | | ||| | ||||||||||||||||||||||||||
Sbjct: 61 cttaagctgttaggtaaagtctctagatatgatttatattattctctaaca 111
>53491_ptc-miRf11669-akr:pmrd
Length = 167
Score = 54.0 bits (27), Expect = 9e-08
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 21 cttaagctgttagatgaggtcccatgatatgatttatattattctctaaca 71
||||||||||||| | | ||| | ||||||||||||||||||||||||||
Sbjct: 106 cttaagctgttaggtaaagtctctagatatgatttatattattctctaaca 56
>52515_ptc-miRf10693-akr:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 2e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 8 ttcaacctaaaatcttaagctgttagatgaggtcccatgatat 50
||||||| |||| |||||||||||| |||||||||| |||||
Sbjct: 50 ttcaacccaaaagtttaagctgttaggtgaggtcccaagatat 92
>54042_ptc-miRf12220-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 8e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1 gaaccatttcaacctaaaatcttaagctgttagatgaggtcccatgatatgatt 54
||||||| |||||| || | ||||||||||||||| ||||| || ||||||||
Sbjct: 35 gaaccatctcaacccaatagcttaagctgttagataaggtctcaaaatatgatt 88
>53218_ptc-miRf11396-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 8e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 1 gaaccatttcaacctaaaatcttaagctgttagatgaggtcccatgatatgatt 54
||||||| |||||| || | ||||||||||||||| ||||| || ||||||||
Sbjct: 87 gaaccatctcaacccaatagcttaagctgttagataaggtctcaaaatatgatt 34
