miRNEST 2.0, an integrative microRNA resource :: BLAST
>51738_ptc-miR396e:pmrd
Length = 145
Score = 161 bits (81), Expect = 2e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 20 ggtcatgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatata 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatata 60
Query: 80 gatcactacatgtacagctcc 100
|||||||||||||||||||||
Sbjct: 61 gatcactacatgtacagctcc 81
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatgg 164
||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtgggagaacatgg 145
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 155 bits (78), Expect = 1e-38
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 23 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
Query: 83 cactacatgtacagctcc 100
||||||||||||||||||
Sbjct: 81 cactacatgtacagctcc 64
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatg 163
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtgggagaacatg 1
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 155 bits (78), Expect = 1e-38
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 23 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagat 82
Query: 83 cactacatgtacagctcc 100
||||||||||||||||||
Sbjct: 81 cactacatgtacagctcc 64
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 127 gcgccatggaagctcaagaaagctgtgggagaacatg 163
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtgggagaacatg 1
>48579_gma-miR396b:pmrd
Length = 126
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 12 caagtcctggtcatgcttttccacagctttcttgaacttctt 53
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 caagtcctggtcatgcttttccacagctttcttgaacttctt 44
Score = 69.9 bits (35), Expect = 7e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 135 gaagctcaagaaagctgtgggagaacatggcaattcagg 173
||||||||||||||||||||||||| |||||||||||||
Sbjct: 86 gaagctcaagaaagctgtgggagaatatggcaattcagg 124
>51737_ptc-miR396d:pmrd
Length = 154
Score = 75.8 bits (38), Expect = 1e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 20 ggtcatgcttttccacagctttcttgaacttctttgccttgcttaa 65
|||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttccttgccatgcttaa 46
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 130 ccatggaagctcaagaaagctgtgggagaacatgg 164
|||||||||||||||||||| ||||||||||||||
Sbjct: 120 ccatggaagctcaagaaagccgtgggagaacatgg 154
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 24 atgcttttccacagctttcttgaacttctttgccttgcttaa 65
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 148 atgcttttccacagctttcttgaacttccttgccatgcttaa 107
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 130 ccatggaagctcaagaaagctgtgggagaacat 162
|||||||||||||||||||| ||||||||||||
Sbjct: 33 ccatggaagctcaagaaagccgtgggagaacat 1
>54869_vvi-miR396b:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaacttctt 53
|||||||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaacttctt 37
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 23 catgcttttccacagctttcttgaacttc 51
|||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76
>54868_vvi-miR396a:pmrd
Length = 116
Score = 60.0 bits (30), Expect = 6e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 gtcatgcttttccacagctttcttgaacttcttt 54
||||||||||||||||||||||||||||| ||||
Sbjct: 5 gtcatgcttttccacagctttcttgaactacttt 38
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 135 gaagctcaagaaagctgtgggagaacatggcaa 167
||||||||||||||||||||||| |||||||||
Sbjct: 84 gaagctcaagaaagctgtgggaggacatggcaa 116
>48748_mtr-miR396a:pmrd
Length = 93
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 25 tgcttttccacagctttcttgaacttcttt 54
||||||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttcttt 30
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 135 gaagctcaagaaagctgtgggagaa 159
|||||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtgggagaa 91
>48580_gma-miR396c:pmrd
Length = 117
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 24 atgcttttccacagctttcttgaacttctt 53
||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44
>47009_ath-miR396b:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 ggtcatgcttttccacagctttcttgaactt 50
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatacttttccacagctttcttgaactt 31
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 133 tggaagctcaagaaagctgtgggagaacatg 163
|||||||||||||||||||||||| ||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132
>54487_sbi-miR396c:pmrd
Length = 162
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaacttct 52
||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 32 ccacagctttcttgaacttctttg 55
||||||||||||||| ||||||||
Sbjct: 141 ccacagctttcttgaccttctttg 118
>51564_pta-miR396:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 21 gtcatgcttttccacagctttcttgaactt 50
||||| ||||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaactt 37
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 23 catgcttttccacagctttcttgaactt 50
|||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83
>48947_osa-miR396c:pmrd
Length = 141
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaacttct 52
||||| ||||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaacttct 33
>55078_zma-miR396g:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tttccacagctttcttgaacttctt 53
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>55077_zma-miR396f:pmrd
Length = 166
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tttccacagctttcttgaacttctt 53
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 6e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 21 gtcatgcttttccacagctttcttgaacttctt 53
|||||||| |||||| |||||||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaacttctt 33
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 23 catgcttttccacagctttcttgaacttc 51
|||| ||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttc 72
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 134 ggaagctcaagaaagctgtgggagaacatggc 165
||||| ||||||||||||||| | ||||||||
Sbjct: 71 ggaagttcaagaaagctgtggaaaaacatggc 102
>51736_ptc-miR396c:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaacttc 51
|||| ||||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttc 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 22 tcatgcttttccacagctttcttgaacttctt 53
||||||| |||||| |||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctt 71
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 134 ggaagctcaagaaagctgtgggagaacatggca 166
||||| ||||||||||||||| | |||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaaacatggca 1
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaactt 50
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 catgcttttccacagctttcttgaactt 50
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 tcatgcttttccacagctttcttgaac 48
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32 ccacagctttcttgaacttc 51
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactt 50
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactt 50
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
