miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 165 bits (83), Expect = 2e-40
Identities = 102/107 (95%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 10 tttgtactccctccgtatcaaaataagtgtcgctgatcctagtataaaatttgtactaat 69
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tttgtactccctccgtatcaaaataagtgtcgctgatt-tagtataaaatttgtactaat 59
Query: 70 ttagtcatcactttgtgacacttattttgggacagagggagtatgcc 116
||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct: 60 ttagttataaatttgtgacacttattttgggacagagggagtatgcc 106
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 85.7 bits (43), Expect = 1e-16
Identities = 86/99 (86%), Gaps = 1/99 (1%)
Strand = Plus / Minus
Query: 14 tactccctccgtatcaaaataagtgtcgctgatcctagtataaaatttgtactaatttag 73
|||||||||||| ||||||||||||||||| || |||||| | ||||||||||| ||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgctgctc-tagtattatatttgtactaacttag 44
Query: 74 tcatcactttgtgacacttattttgggacagagggagta 112
| | | |||| ||||||||||||||||| |||||||||
Sbjct: 43 tactaaatttgcgacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 76 gacacttattttgggacggagggagtat 103
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 73.8 bits (37), Expect = 5e-13
Identities = 83/97 (85%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 16 ctccctccgtatcaaaataagtgtcgctgatcctagtataaaatttgtactaatttagtc 75
|||||||||| ||||||| |||||||| || ||||||||||||||||||| ||| ||
Sbjct: 7 ctccctccgtctcaaaatgagtgtcgcccatt-tagtataaaatttgtactagtttggtt 65
Query: 76 atcactttgtgacacttattttgggacagagggagta 112
|| | ||| ||||||||||||||||| |||||||||
Sbjct: 66 ataaatttacgacacttattttgggaccgagggagta 102
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 58.0 bits (29), Expect = 3e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 14 tactccctccgtatcaaaataagtgtcgctgatcctagtataaaatttgtactaatttag 73
|||||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtcgttgatc-tagtacaaaatttgtactcatttag 44
Query: 74 t 74
|
Sbjct: 43 t 43
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||||||||||||||
Sbjct: 29 cacttattttgggacagagggagtat 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 88 cacttattttgggacggagggagtat 113
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||||||||||||||
Sbjct: 29 cacttattttgggacagagggagtat 4
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacttattttgggacagagggagta 112
|||||||||||||||||||||||||
Sbjct: 40 cacttattttgggacagagggagta 64
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 tgtactccctccgtatcaaaataagtgtc 40
|||||||||||||| ||||||||||||||
Sbjct: 3 tgtactccctccgtctcaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttgggacagagggagta 112
||||||||||||||||| |||||||||
Sbjct: 75 gacacttattttgggacggagggagta 101
>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 85 tgacacttattttgggacagagggagta 112
||||||| ||||||||||||||||||||
Sbjct: 32 tgacactcattttgggacagagggagta 5
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 74 gacacttattttgggacggagggagtat 101
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 75 gacacttattttgggacggagggagtat 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagta 112
||||||||||||||||| |||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gtactccctccgtatcaaaataagtgtc 40
||||||||||||| ||||||||||||||
Sbjct: 4 gtactccctccgtctcaaaataagtgtc 31
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagtat 113
||||||||||||||||| ||||||||||
Sbjct: 31 gacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 ttattttgggacagagggagtatg 114
||||||||||||||||||||||||
Sbjct: 98 ttattttgggacagagggagtatg 121
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagta 112
||||||||||||||||| |||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 86 gacacttattttgggacagagggagta 112
||||||||||||||||| |||||||||
Sbjct: 31 gacacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtatg 114
||||||||||||||| |||||||||||
Sbjct: 29 cacttattttgggacggagggagtatg 3
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtatg 114
||||||||||||||| |||||||||||
Sbjct: 29 cacttattttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 92 tattttgggacagagggagtatg 114
|||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtatg 3
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 220 cacttattttgggacggagggagtat 245
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa Japonica
Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 87 acacttattttgggacagagggagta 112
|||||||||||||||| |||||||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 tattttgggacagagggagtat 113
||||||||||||||||||||||
Sbjct: 22 tattttgggacagagggagtat 1
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tattttgggacagagggagtat 113
||||||||||||||||||||||
Sbjct: 222 tattttgggacagagggagtat 243
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 216 cacttattttgggacggagggagtat 241
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 tgacacttattttgggacagagggagtatg 114
|||||||||||||||||| |||||| ||||
Sbjct: 32 tgacacttattttgggacggagggaatatg 3
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagaggga 109
||||||||||||||||||||||
Sbjct: 29 cacttattttgggacagaggga 8
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 cacttattttgggacagagggagtat 113
||||||||||||||| ||||||||||
Sbjct: 76 cacttattttgggacggagggagtat 101
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 92 tattttgggacagagggagtat 113
||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtat 4
>RF00906;MIR1122;AP004621.3/94317-94428 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 93 attttgggacagagggagtatg 114
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtatg 3
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 tattttgggacagagggagtat 113
||||||||||||||||||||||
Sbjct: 107 tattttgggacagagggagtat 128
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 ttattttgggacagagggagta 112
||||||||||||||||||||||
Sbjct: 96 ttattttgggacagagggagta 117
>RF00906;MIR1122;AAAA02008325.1/22579-22685 39946:Oryza sativa
Indica Group
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 88 cacttattttgggacagagggagtat 113
||||||| ||||||||||||||||||
Sbjct: 29 cacttatattgggacagagggagtat 4
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 91 ttattttgggacagagggagtatgcc 116
|||||||||||| |||||||||||||
Sbjct: 26 ttattttgggacggagggagtatgcc 1
