miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 212 bits (107), Expect = 1e-54
Identities = 113/115 (98%)
Strand = Plus / Plus
Query: 37 agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtacat 96
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5 agagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtactt 64
Query: 97 gttttggctctacccatgcactgcctcttccctggcttgtggctcttctttttct 151
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 gttttggctctacccatgcactgcctcttccctggcttgtggctcttccttttct 119
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 111 bits (56), Expect = 3e-24
Identities = 105/119 (88%), Gaps = 3/119 (2%)
Strand = Plus / Plus
Query: 33 agaaagagacagatgaagacggggaacaggcagagcatggatggagctactaacagaagt 92
||||| ||||||| ||||| |||||||||||| |||||||||| |||||||||||||
Sbjct: 1 agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaa-a 59
Query: 93 aca--tgttttggctctacccatgcactgcctcttccctggcttgtggctcttcttttt 149
||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct: 60 acatctgttttggctctacccctgcactgcctcttccctggcttccggttcttcttttt 118
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 96 tgttttggctctacccatgcactgcctcttccctggct 133
|||||| |||||||||||||||||||||||||||||||
Sbjct: 71 tgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 63.9 bits (32), Expect = 7e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 98 ttttggctctacccatgcactgcctcttccctggct 133
||||| ||||||||||||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 96 tgttttggctctacccatgcactgcctcttccctggc 132
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 gggaacaggcagagcatggatggagcta 81
||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 98 ttttggctctacccatgcactgcctcttccctggct 133
|||||| ||||||| |||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggct 106
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 96 tgttttggctctacccatgcactgcctcttccctggctt 134
|||| |||||| || ||||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 catgcactgcctcttccctggct 133
|||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139
