miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x Populus
deltoides
Length = 120
Score = 238 bits (120), Expect = 2e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 13 tggagaaacatcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagaaacatcattgagtgcagcgttgatgaaatcctacattttgtgttattaaattgt 60
Query: 73 taccaaccctttatggggcatggcatcatttcaccagcgctgcattcaatcatgtttttc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccaaccctttatggggcatggcatcatttcaccagcgctgcattcaatcatgtttttc 120
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 13 tggagaaacatcattgagtgcagcgttgatga 44
||||||||||||||||||||||||||||||||
Sbjct: 1 tggagaaacatcattgagtgcagcgttgatga 32
>RF00704;MIR397;AARH01002083.1/50091-50204 3694:Populus trichocarpa
Length = 114
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 97 atcatttcaccagcgctgcattcaatcatgtttttc 132
||||||||||||||||||||||||| ||||||||||
Sbjct: 79 atcatttcaccagcgctgcattcaaccatgtttttc 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 cattgagtgcagcgttgatgaaat 47
||||||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatgaaat 35
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 aaacatcattgagtgcagcgttgatgaaa 46
|||||||||||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatgaaa 34
>RF00704;MIR397;BABK01000209.1/917-1021 34305:Lotus japonicus
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 tggagaaacatcattgagtgcagcgttgatgaaatcct 50
|||| |||||| ||||||||||||||||||||| ||||
Sbjct: 1 tggataaacattattgagtgcagcgttgatgaagtcct 38
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 aacatcattgagtgcagcgttgatg 43
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 aacatcattgagtgcagcgttgatg 43
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 catcattgagtgcagcgttgatgaa 45
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgaa 33
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 catcattgagtgcagcgttgatga 44
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
