miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45507_miR171:micropc
Length = 88
Score = 174 bits (88), Expect = 1e-44
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 21 agcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacga 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacga 60
Query: 81 tctcagattgagccgcgccaatatcact 108
||||||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatcact 88
>45439_miR171:micropc
Length = 86
Score = 170 bits (86), Expect = 2e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 22 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 60
Query: 82 ctcagattgagccgcgccaatatcac 107
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>45180_miR171:micropc
Length = 86
Score = 170 bits (86), Expect = 2e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 22 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgat 60
Query: 82 ctcagattgagccgcgccaatatcac 107
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>46191_miR171:micropc
Length = 83
Score = 165 bits (83), Expect = 1e-41
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 60
Query: 84 cagattgagccgcgccaatatca 106
|||||||||||||||||||||||
Sbjct: 61 cagattgagccgcgccaatatca 83
>45723_miR171:micropc
Length = 82
Score = 163 bits (82), Expect = 4e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 60
Query: 84 cagattgagccgcgccaatatc 105
||||||||||||||||||||||
Sbjct: 61 cagattgagccgcgccaatatc 82
>45597_miR171:micropc
Length = 82
Score = 163 bits (82), Expect = 4e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 60
Query: 84 cagattgagccgcgccaatatc 105
||||||||||||||||||||||
Sbjct: 61 cagattgagccgcgccaatatc 82
>45121_miR171:micropc
Length = 82
Score = 163 bits (82), Expect = 4e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatct 60
Query: 84 cagattgagccgcgccaatatc 105
||||||||||||||||||||||
Sbjct: 61 cagattgagccgcgccaatatc 82
>46459_miR171:micropc
Length = 80
Score = 159 bits (80), Expect = 6e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 25 atgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatctc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgttggtgaggttcaatccgaagacgagtttacgttttgttttcgtaaagaacgatctc 60
Query: 85 agattgagccgcgccaatat 104
||||||||||||||||||||
Sbjct: 61 agattgagccgcgccaatat 80
>46823_miR171:micropc
Length = 91
Score = 97.6 bits (49), Expect = 2e-21
Identities = 81/91 (89%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 21 agcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaa 77
||||||||||||||||||||||||||||||| |||||| ||| || ||||||| |
Sbjct: 1 agcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaata 60
Query: 78 cgatctcagattgagccgcgccaatatcact 108
|||||||||||||||||||||||||||||||
Sbjct: 61 cgatctcagattgagccgcgccaatatcact 91
>46414_miR171:micropc
Length = 89
Score = 93.7 bits (47), Expect = 3e-20
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 22 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 78
|||||||||||||||||||||||||||||| |||||| ||| || ||||||| ||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
Query: 79 gatctcagattgagccgcgccaatatcac 107
|||||||||||||||||||||||||||||
Sbjct: 61 gatctcagattgagccgcgccaatatcac 89
>46256_miR171:micropc
Length = 89
Score = 93.7 bits (47), Expect = 3e-20
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 22 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 78
|||||||||||||||||||||||||||||| |||||| ||| || ||||||| ||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
Query: 79 gatctcagattgagccgcgccaatatcac 107
|||||||||||||||||||||||||||||
Sbjct: 61 gatctcagattgagccgcgccaatatcac 89
>44930_miR171:micropc
Length = 86
Score = 87.7 bits (44), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 80
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 81 tctcagattgagccgcgccaatatca 106
||||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatca 86
>46236_miR171:micropc
Length = 85
Score = 85.7 bits (43), Expect = 7e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 80
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 81 tctcagattgagccgcgccaatatc 105
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>45865_miR171:micropc
Length = 85
Score = 85.7 bits (43), Expect = 7e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 80
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 81 tctcagattgagccgcgccaatatc 105
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>45007_miR171:micropc
Length = 85
Score = 85.7 bits (43), Expect = 7e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 24 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 80
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 81 tctcagattgagccgcgccaatatc 105
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>46075_miR171:micropc
Length = 83
Score = 81.8 bits (41), Expect = 1e-16
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 25 atgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacgat 81
||||||||||||||||||||||||||| |||||| ||| || ||||||| |||||
Sbjct: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
Query: 82 ctcagattgagccgcgccaatat 104
|||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatat 83
