miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45622_miR528:micropc
Length = 86
Score = 139 bits (70), Expect = 6e-34
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagcaggaggtttggttggaagccgacttgtgctaccctcgc 81
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 1 tggaaggggcatgcagaggagcaggaggtttggttggaagccgacctgcgctaccctcgg 60
Query: 82 tcgctctcctgtgcctgcctcttcca 107
| ||||||||||||||||||||||||
Sbjct: 61 ttgctctcctgtgcctgcctcttcca 86
>44942_miR528:micropc
Length = 82
Score = 85.7 bits (43), Expect = 7e-18
Identities = 77/87 (88%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagcaggaggtttggttggaagccgacttgtgctac-cctcg 80
||||||||||||||||||||||| |||| |||| ||||||||||| |||| |||||
Sbjct: 1 tggaaggggcatgcagaggagcacgagggttggctggaagccgac-----ctacgcctcg 55
Query: 81 ctcgctctcctgtgcctgcctcttcca 107
|| ||||||||||||||||||||||||
Sbjct: 56 ctggctctcctgtgcctgcctcttcca 82
>45035_miR528:micropc
Length = 92
Score = 81.8 bits (41), Expect = 1e-16
Identities = 79/92 (85%), Gaps = 6/92 (6%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagcaggaggtttggttggaagccgacttgtgcta------c 75
||||||||||||||||||||||| |||| |||| | |||||||| ||||||| |
Sbjct: 1 tggaaggggcatgcagaggagcacgaggcttggctaaaagccgacctgtgctatgctacc 60
Query: 76 cctcgctcgctctcctgtgcctgcctcttcca 107
||||||| ||||||||||||||||||||||||
Sbjct: 61 cctcgctggctctcctgtgcctgcctcttcca 92
>46551_miR528:micropc
Length = 82
Score = 69.9 bits (35), Expect = 4e-13
Identities = 75/87 (86%), Gaps = 6/87 (6%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagcaggaggtttggttggaagccgacttgtgctac-cctcg 80
||||||||||||||| ||||||| ||| |||| ||||||||||| |||| |||||
Sbjct: 1 tggaaggggcatgcaaaggagcacaaggcttggctggaagccgac-----ctacgcctcg 55
Query: 81 ctcgctctcctgtgcctgcctcttcca 107
|| ||||||||||||||||||||||||
Sbjct: 56 ctggctctcctgtgcctgcctcttcca 82
>45655_miR528:micropc
Length = 84
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagcaggag 48
|||||||||||||||||||||||||||
Sbjct: 1 tggaaggggcatgcagaggagcaggag 27
>46253_miR528:micropc
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggagca 44
|||||||||||||||||||||||
Sbjct: 1 tggaaggggcatgcagaggagca 23
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 ctctcctgtgcctgcctcttcca 107
|||||||||||||||||||||||
Sbjct: 95 ctctcctgtgcctgcctcttcca 117
>46295_miR528:micropc
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tggaaggggcatgcagaggag 42
|||||||||||||||||||||
Sbjct: 1 tggaaggggcatgcagaggag 21
