miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44993_miR159:micropc
Length = 174
Score = 345 bits (174), Expect = 8e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 12 gggcgctcccttcagtccaaccaagggccacgtggggatgattcaactgctggttcctgg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcgctcccttcagtccaaccaagggccacgtggggatgattcaactgctggttcctgg 60
Query: 72 actctattgtcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatga 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actctattgtcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatga 120
Query: 132 cacaggagttagattgcccttacggtgtttttatttggcttgaagggagctccc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacaggagttagattgcccttacggtgtttttatttggcttgaagggagctccc 174
>46121_miR159:micropc
Length = 172
Score = 341 bits (172), Expect = 1e-94
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 13 ggcgctcccttcagtccaaccaagggccacgtggggatgattcaactgctggttcctgga 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgctcccttcagtccaaccaagggccacgtggggatgattcaactgctggttcctgga 60
Query: 73 ctctattgtcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctattgtcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgac 120
Query: 133 acaggagttagattgcccttacggtgtttttatttggcttgaagggagctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaggagttagattgcccttacggtgtttttatttggcttgaagggagctcc 172
>46072_miR159:micropc
Length = 174
Score = 89.7 bits (45), Expect = 7e-19
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 21 cttcagtccaaccaagggccacgtggggatgattcaactgctggttcctggactctattg 80
|||||||||||| || |||| | |||||||||||||||||||||| ||||||||| |
Sbjct: 10 cttcagtccaacgaaaggccgtatagggatgattcaactgctggttcatggactctacta 69
Query: 81 tcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgacacaggagt 140
||||| ||| |||||| | || |||| ||||||||| ||||||||||||| |||||
Sbjct: 70 tcttgtaatcctcgaggttcagtattggcggcaagataatggtgtgcatgacacgggagt 129
Query: 141 tagattgcccttacggtgtttttatttggcttgaagggagctccc 185
|||||| |||| |||||||| |||| |||||| ||||||||
Sbjct: 130 cgtattgccactacgctgtttttacttggattgaagagagctccc 174
>45489_miR159:micropc
Length = 174
Score = 89.7 bits (45), Expect = 7e-19
Identities = 135/165 (81%)
Strand = Plus / Plus
Query: 21 cttcagtccaaccaagggccacgtggggatgattcaactgctggttcctggactctattg 80
|||||||||||| || |||| | |||||||||||||||||||||| ||||||||| |
Sbjct: 10 cttcagtccaacgaaaggccgtatagggatgattcaactgctggttcatggactctacta 69
Query: 81 tcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgacacaggagt 140
||||| ||| |||||| | || |||| ||||||||| ||||||||||||| |||||
Sbjct: 70 tcttgtaatcctcgaggttcagtattggcggcaagataatggtgtgcatgacacgggagt 129
Query: 141 tagattgcccttacggtgtttttatttggcttgaagggagctccc 185
|||||| |||| |||||||| |||| |||||| ||||||||
Sbjct: 130 cgtattgccactacgctgtttttacttggattgaagagagctccc 174
>46313_miR159:micropc
Length = 172
Score = 87.7 bits (44), Expect = 3e-18
Identities = 134/164 (81%)
Strand = Plus / Plus
Query: 21 cttcagtccaaccaagggccacgtggggatgattcaactgctggttcctggactctattg 80
|||||||||||| || |||| | |||||||||||||||||||||| ||||||||| |
Sbjct: 9 cttcagtccaacgaaaggccgtatagggatgattcaactgctggttcatggactctacta 68
Query: 81 tcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgacacaggagt 140
||||| ||| |||||| | || |||| ||||||||| ||||||||||||| |||||
Sbjct: 69 tcttgtaatcctcgaggttcagtattggcggcaagataatggtgtgcatgacacgggagt 128
Query: 141 tagattgcccttacggtgtttttatttggcttgaagggagctcc 184
|||||| |||| |||||||| |||| |||||| |||||||
Sbjct: 129 cgtattgccactacgctgtttttacttggattgaagagagctcc 172
>46214_miR159:micropc
Length = 172
Score = 87.7 bits (44), Expect = 3e-18
Identities = 134/164 (81%)
Strand = Plus / Plus
Query: 21 cttcagtccaaccaagggccacgtggggatgattcaactgctggttcctggactctattg 80
|||||||||||| || |||| | |||||||||||||||||||||| ||||||||| |
Sbjct: 9 cttcagtccaacgaaaggccgtatagggatgattcaactgctggttcatggactctacta 68
Query: 81 tcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgacacaggagt 140
||||| ||| |||||| | || |||| ||||||||| ||||||||||||| |||||
Sbjct: 69 tcttgtaatcctcgaggttcagtattggcggcaagataatggtgtgcatgacacgggagt 128
Query: 141 tagattgcccttacggtgtttttatttggcttgaagggagctcc 184
|||||| |||| |||||||| |||| |||||| |||||||
Sbjct: 129 cgtattgccactacgctgtttttacttggattgaagagagctcc 172
>45902_miR159:micropc
Length = 170
Score = 85.7 bits (43), Expect = 1e-17
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 21 cttcagtccaaccaagggccacgtggggatgattcaactgctggttcctggactctattg 80
|||||||||||| || |||| | |||||||||||||||||||||| ||||||||| |
Sbjct: 8 cttcagtccaacgaaaggccgtatagggatgattcaactgctggttcatggactctacta 67
Query: 81 tcttgcaatgctcgagaaacggttttggtctcaagataatagtgtgcatgacacaggagt 140
||||| ||| |||||| | || |||| ||||||||| ||||||||||||| |||||
Sbjct: 68 tcttgtaatcctcgaggttcagtattggcggcaagataatggtgtgcatgacacgggagt 127
Query: 141 tagattgcccttacggtgtttttatttggcttgaagggagctc 183
|||||| |||| |||||||| |||| |||||| ||||||
Sbjct: 128 cgtattgccactacgctgtttttacttggattgaagagagctc 170
>46732_miR319:micropc
Length = 166
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 161 tttatttggcttgaagggagctcc 184
||||||||| ||||||||||||||
Sbjct: 143 tttatttggattgaagggagctcc 166
>46495_miR319:micropc
Length = 191
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 gctcccttcagtccaaccaa 35
||||||||||||||||||||
Sbjct: 188 gctcccttcagtccaaccaa 169
>45561_miR159:micropc
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 161 tttatttggcttgaagggagctcc 184
||||||||| ||||||||||||||
Sbjct: 145 tttatttggattgaagggagctcc 168
>45218_miR319:micropc
Length = 166
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 161 tttatttggcttgaagggagctcc 184
||||||||| ||||||||||||||
Sbjct: 143 tttatttggattgaagggagctcc 166
>44971_miR319:micropc
Length = 195
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 16 gctcccttcagtccaaccaa 35
||||||||||||||||||||
Sbjct: 192 gctcccttcagtccaaccaa 173
