miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45887_miR157:micropc
Length = 79
Score = 157 bits (79), Expect = 2e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgt 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgt 60
Query: 88 actctctatacttctgtca 106
|||||||||||||||||||
Sbjct: 61 actctctatacttctgtca 79
>46109_miR157:micropc
Length = 78
Score = 155 bits (78), Expect = 1e-38
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgta 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgta 60
Query: 89 ctctctatacttctgtca 106
||||||||||||||||||
Sbjct: 61 ctctctatacttctgtca 78
>44901_miR156:micropc
Length = 72
Score = 143 bits (72), Expect = 4e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 32 cagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgtactc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagatagagagcaccaacgatgaagttgcaaactttgcatctcactcctttgtactc 60
Query: 92 tctatacttctg 103
||||||||||||
Sbjct: 61 tctatacttctg 72
>46830_miR157:micropc
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctgtca 81
>46821_miR157:micropc
Length = 84
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 48 tgcatctcactcctttgtgctctctatgcttctgtca 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>46542_miR157:micropc
Length = 82
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 46 tgcatctcactcctttgtgctctctatgcttctgtca 82
>45538_miR157:micropc
Length = 85
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 49 tgcatctcactcctttgtgctctctatgcttctgtca 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>45460_miR157:micropc
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctgtca 81
>44822_miR157:micropc
Length = 80
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||||||||||||||| |||||||| |||||||||
Sbjct: 44 tgcatctcactcctttgtgctctctatgcttctgtca 80
>46687_miR156:micropc
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctg 103
|||||||||||||||||| |||||||| ||||||
Sbjct: 41 tgcatctcactcctttgtgctctctatgcttctg 74
>46407_miR156:micropc
Length = 75
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctg 103
|||||||||||||||||| |||||||| ||||||
Sbjct: 42 tgcatctcactcctttgtgctctctatgcttctg 75
>45004_miR156:micropc
Length = 78
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctg 103
|||||||||||||||||| |||||||| ||||||
Sbjct: 45 tgcatctcactcctttgtgctctctatgcttctg 78
>46572_miR157:micropc
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 71 gcatctcactcctttgtactctctatacttctgtca 106
||||||||||||||||| ||||||| |||||||||
Sbjct: 48 gcatctcactcctttgtgctctctagtcttctgtca 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>44931_miR157:micropc
Length = 84
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 71 gcatctcactcctttgtactctctatacttctgtca 106
||||||||||||||||| ||||||| |||||||||
Sbjct: 49 gcatctcactcctttgtgctctctagtcttctgtca 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46718_miR157:micropc
Length = 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 76 tcactcctttgtactctctatacttctgtca 106
|||||||||||| |||||||| |||||||||
Sbjct: 54 tcactcctttgtgctctctatgcttctgtca 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45409_miR157:micropc
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 76 tcactcctttgtactctctatacttctgtca 106
|||||||||||| |||||||| |||||||||
Sbjct: 55 tcactcctttgtgctctctatgcttctgtca 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46632_miR157:micropc
Length = 144
Score = 44.1 bits (22), Expect = 3e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 70 tgcatctc-actcctttgtactctctatacttctgtca 106
|||||||| |||| ||||| ||||||||||||||||||
Sbjct: 107 tgcatctctactcttttgtgctctctatacttctgtca 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcaccaacgatga 57
|||||||||||||||||||| || |||||
Sbjct: 1 tgacagaagatagagagcactaaggatga 29
>46252_miR157:micropc
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcaccaacgatga 57
||||||||||||||||||||| || |||||
Sbjct: 1 ttgacagaagatagagagcactaaggatga 30
Score = 44.1 bits (22), Expect = 3e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 70 tgcatctc-actcctttgtactctctatacttctgtca 106
|||||||| |||| ||||| ||||||||||||||||||
Sbjct: 108 tgcatctctactcttttgtgctctctatacttctgtca 145
>45968_miR157:micropc
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcaccaacgatga 57
||||||||||||||||||||| || |||||
Sbjct: 1 ttgacagaagatagagagcactaatgatga 30
>45009_miR157:micropc
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcaccaacgatga 57
||||||||||||||||||||| || |||||
Sbjct: 1 ttgacagaagatagagagcactaatgatga 30
>46332_miR157:micropc
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46100_miR157:micropc
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcaccaacgatga 57
|||||||||||||||||||| || |||||
Sbjct: 1 tgacagaagatagagagcactaatgatga 29
>45936_miR157:micropc
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45911_miR157:micropc
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>45574_miR157:micropc
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>45172_miR157:micropc
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||| ||||||||||| |||| ||| |||||||||
Sbjct: 55 tgcatcccactcctttgtgctctttatgcttctgtca 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45152_miR157:micropc
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||| ||||||||||| |||| ||| |||||||||
Sbjct: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
>44919_miR157:micropc
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 70 tgcatctcactcctttgtactctctatacttctgtca 106
|||||| ||||||||||| |||| ||| |||||||||
Sbjct: 56 tgcatcccactcctttgtgctctttatgcttctgtca 92
>44895_miR157:micropc
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcaccaacgatga 57
|||||||||||||||||||| || |||||
Sbjct: 1 tgacagaagatagagagcactaatgatga 29
>44856_miR156:micropc
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 gcatctcactcctttgtactctcta 95
||||||||||||||||| |||||||
Sbjct: 45 gcatctcactcctttgtgctctcta 69
>44820_miR157:micropc
Length = 137
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 ttgacagaagatagagagcac 48
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>46812_miR157:micropc
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>46595_miR157:micropc
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>46591_miR156:micropc
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 76 tcactcctttgtactctctatacttctg 103
|||||||||||| |||||||| ||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctg 78
>46391_miR157:micropc
Length = 129
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45959_miR157:micropc
Length = 161
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45944_miR157:micropc
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
>45761_miR157:micropc
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 tgacagaagatagagagcac 48
||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcac 20
