miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46384_miR398:micropc
Length = 107
Score = 165 bits (83), Expect = 1e-41
Identities = 99/107 (92%)
Strand = Plus / Plus
Query: 22 aggagtgatactaagaacacatgtgatggaatgagtgcattgatatgctgtatggtacaa 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgatactaagaacacatgtgatggaatgagtgcattgatatgctgtatggtacaa 60
Query: 82 ctctttgatgcacannnnnnnncatttgtgttctcaggtcacccctt 128
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 ctctttgatgcacattttttttcatttgtgttctcaggtcacccctt 107
>46478_miR398:micropc
Length = 105
Score = 161 bits (81), Expect = 2e-40
Identities = 97/105 (92%)
Strand = Plus / Plus
Query: 23 ggagtgatactaagaacacatgtgatggaatgagtgcattgatatgctgtatggtacaac 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagtgatactaagaacacatgtgatggaatgagtgcattgatatgctgtatggtacaac 60
Query: 83 tctttgatgcacannnnnnnncatttgtgttctcaggtcacccct 127
||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 tctttgatgcacattttttttcatttgtgttctcaggtcacccct 105
>46128_miR398:micropc
Length = 140
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||||
Sbjct: 116 catttgtgttctcaggtcacccctt 140
>45412_miR398:micropc
Length = 143
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||||
Sbjct: 119 catttgtgttctcaggtcacccctt 143
>45213_miR398:micropc
Length = 141
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||||
Sbjct: 117 catttgtgttctcaggtcacccctt 141
>46357_miR398:micropc
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccct 127
||||||||||||||||||||||||
Sbjct: 116 catttgtgttctcaggtcacccct 139
>45917_miR398:micropc
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccct 127
||||||||||||||||||||||||
Sbjct: 117 catttgtgttctcaggtcacccct 140
>45602_miR398:micropc
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccct 127
||||||||||||||||||||||||
Sbjct: 119 catttgtgttctcaggtcacccct 142
>45118_miR398:micropc
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 catttgtgttctcaggtcacccct 127
||||||||||||||||||||||||
Sbjct: 116 catttgtgttctcaggtcacccct 139
>46310_miR398:micropc
Length = 113
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||
Sbjct: 91 tttgtgttctcaggtcacccctt 113
>45772_miR398:micropc
Length = 92
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||
Sbjct: 70 tttgtgttctcaggtcacccctt 92
>45083_miR398:micropc
Length = 92
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccctt 128
|||||||||||||||||||||||
Sbjct: 70 tttgtgttctcaggtcacccctt 92
>46761_miR398:micropc
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccctt 128
||||||||||||||||||||||
Sbjct: 112 ttgtgttctcaggtcacccctt 133
>46499_miR398:micropc
Length = 67
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccctt 128
||||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccctt 67
>46301_miR398:micropc
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccct 127
||||||||||||||||||||||
Sbjct: 90 tttgtgttctcaggtcacccct 111
>45871_miR398:micropc
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccctt 128
||||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccctt 140
>45427_miR398:micropc
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccct 127
||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccct 94
>44964_miR398:micropc
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tttgtgttctcaggtcacccct 127
||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccct 94
>46491_miR398:micropc
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccct 127
|||||||||||||||||||||
Sbjct: 111 ttgtgttctcaggtcacccct 131
>46328_miR398:micropc
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccct 127
|||||||||||||||||||||
Sbjct: 118 ttgtgttctcaggtcacccct 138
>46028_miR398:micropc
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccctt 128
|||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccctt 150
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 22 aggagtgatactaagaacacatgtgatggaat 53
|||||||| ||||||||||||| || ||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaat 32
>45288_miR398:micropc
Length = 65
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 107 ttgtgttctcaggtcacccct 127
|||||||||||||||||||||
Sbjct: 45 ttgtgttctcaggtcacccct 65
>46703_miR398:micropc
Length = 149
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 22 aggagtgatactaagaacacatgtgatggaat 53
|||||||| ||||||||||||| || ||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaat 32
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccct 127
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46124_miR398:micropc
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccct 127
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>45706_miR398:micropc
Length = 106
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccct 127
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccct 127
||||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 tgtgttctcaggtcacccct 127
||||||||||||||||||||
Sbjct: 76 tgtgttctcaggtcacccct 95
