miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46124_miR398:micropc
Length = 97
Score = 192 bits (97), Expect = 4e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 14 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataa 60
Query: 74 cacatctgtcttttcatgtgttctcaggtcacccctg 110
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacatctgtcttttcatgtgttctcaggtcacccctg 97
>45370_miR398:micropc
Length = 95
Score = 188 bits (95), Expect = 7e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 15 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccacatcattataac 60
Query: 75 acatctgtcttttcatgtgttctcaggtcacccct 109
|||||||||||||||||||||||||||||||||||
Sbjct: 61 acatctgtcttttcatgtgttctcaggtcacccct 95
>45380_miR398:micropc
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 catgtgttctcaggtcacccctg 110
|||||||||||||||||||||||
Sbjct: 86 catgtgttctcaggtcacccctg 108
>45706_miR398:micropc
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 catgtgttctcaggtcacccct 109
||||||||||||||||||||||
Sbjct: 85 catgtgttctcaggtcacccct 106
>46703_miR398:micropc
Length = 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 atgtgttctcaggtcacccct 109
|||||||||||||||||||||
Sbjct: 129 atgtgttctcaggtcacccct 149
>46028_miR398:micropc
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 atgtgttctcaggtcacccct 109
|||||||||||||||||||||
Sbjct: 129 atgtgttctcaggtcacccct 149
>45294_miR398:micropc
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 86 ttcatgtgttctcaggtcacccctg 110
|||||||||||||||||| ||||||
Sbjct: 74 ttcatgtgttctcaggtcgcccctg 98
>46761_miR398:micropc
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 113 tgtgttctcaggtcacccct 132
>46686_miR398:micropc
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 ttcatgtgttctcaggtcacccct 109
|||||||||||||||||| |||||
Sbjct: 73 ttcatgtgttctcaggtcgcccct 96
>46499_miR398:micropc
Length = 67
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcacccct 66
>46491_miR398:micropc
Length = 131
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 112 tgtgttctcaggtcacccct 131
>46478_miR398:micropc
Length = 105
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
>46384_miR398:micropc
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>46371_miR398:micropc
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 tcatgtgttctcaggtcacccctg 110
||||||||||||||||| ||||||
Sbjct: 54 tcatgtgttctcaggtcgcccctg 77
>46357_miR398:micropc
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>46328_miR398:micropc
Length = 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 119 tgtgttctcaggtcacccct 138
>46310_miR398:micropc
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 93 tgtgttctcaggtcacccct 112
>46301_miR398:micropc
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 92 tgtgttctcaggtcacccct 111
>46128_miR398:micropc
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>46034_miR398:micropc
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 tcatgtgttctcaggtcacccctg 110
||||||||||||||||| ||||||
Sbjct: 54 tcatgtgttctcaggtcgcccctg 77
>45917_miR398:micropc
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 121 tgtgttctcaggtcacccct 140
>45871_miR398:micropc
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>45772_miR398:micropc
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcacccct 91
>45602_miR398:micropc
Length = 142
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 123 tgtgttctcaggtcacccct 142
>45427_miR398:micropc
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>45412_miR398:micropc
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 123 tgtgttctcaggtcacccct 142
>45288_miR398:micropc
Length = 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 46 tgtgttctcaggtcacccct 65
>45213_miR398:micropc
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 121 tgtgttctcaggtcacccct 140
>45118_miR398:micropc
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 120 tgtgttctcaggtcacccct 139
>45083_miR398:micropc
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcacccct 91
>44964_miR398:micropc
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 tgtgttctcaggtcacccct 109
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
