miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46798_miR156:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgtaaatat 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgtaaatat 60
Query: 72 gcgtgtgctcacttctcttgctgtca 97
||||||||||||||||||||||||||
Sbjct: 61 gcgtgtgctcacttctcttgctgtca 86
>45125_miR156:micropc
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgtaaatatg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgtaaatatg 60
Query: 73 cgtgtgctcacttctcttgctgtc 96
||||||||||||||||||||||||
Sbjct: 61 cgtgtgctcacttctcttgctgtc 84
>46175_miR156:micropc
Length = 92
Score = 87.7 bits (44), Expect = 2e-18
Identities = 81/92 (88%), Gaps = 6/92 (6%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat 69
|||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||
Sbjct: 1 tgacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaat 60
Query: 70 ----atgcgtgtgctcacttctcttgctgtca 97
||||||||||||||||||||||||||||
Sbjct: 61 tatgatgcgtgtgctcacttctcttgctgtca 92
>45587_miR156:micropc
Length = 90
Score = 83.8 bits (42), Expect = 2e-17
Identities = 79/90 (87%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaacaattgtatagagaggtatacacttgt--aaat- 69
||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| |||
Sbjct: 1 gacagaagagagtgagcatatgcaagcaattgtatagagagatatgctcttgttgtaatt 60
Query: 70 ---atgcgtgtgctcacttctcttgctgtc 96
|||||||||||||||||||||||||||
Sbjct: 61 atgatgcgtgtgctcacttctcttgctgtc 90
>45062_miR156:micropc
Length = 91
Score = 81.8 bits (41), Expect = 9e-17
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---a 66
||||||||||||||||||||||||||| ||||||||||| | | |||||| |||| |
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
Query: 67 aatatgcgtgtgctcacttctcttgctgtca 97
| |||||||||||||||||||||||||||||
Sbjct: 61 attatgcgtgtgctcacttctcttgctgtca 91
>45047_miR156:micropc
Length = 91
Score = 81.8 bits (41), Expect = 9e-17
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---a 66
||||||||||||||||||||||||||| ||||||||||| | | |||||| |||| |
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
Query: 67 aatatgcgtgtgctcacttctcttgctgtca 97
| |||||||||||||||||||||||||||||
Sbjct: 61 attatgcgtgtgctcacttctcttgctgtca 91
>45582_miR156:micropc
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 67
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 68 atatgcgtgtgctcacttctcttgctgtc 96
||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 79/89 (88%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 67
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 68 atatgcgtgtgctcacttctcttgctgtc 96
||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45810_miR156:micropc
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 80/91 (87%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---a 66
||||||||||||||||||||||||||| ||||||||||| | | |||||| |||| |
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttgga 60
Query: 67 aatatgcgtgtgctcacttctcttgctgtca 97
| ||||||||||| |||||||||||||||||
Sbjct: 61 attatgcgtgtgcccacttctcttgctgtca 91
>44842_miR156:micropc
Length = 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 80/91 (87%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaa-caattgtat-agagaggtatacacttgt---a 66
||||||||||||||||||||||||||| ||||||||| | | | |||||| |||| |
Sbjct: 1 tgacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttgga 60
Query: 67 aatatgcgtgtgctcacttctcttgctgtca 97
| |||||||||||||||||||||||||||||
Sbjct: 61 attatgcgtgtgctcacttctcttgctgtca 91
>45659_miR156:micropc
Length = 89
Score = 69.9 bits (35), Expect = 4e-13
Identities = 78/89 (87%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 67
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 68 atatgcgtgtgctcacttctcttgctgtc 96
||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgcccacttctcttgctgtc 89
>45528_miR156:micropc
Length = 89
Score = 69.9 bits (35), Expect = 4e-13
Identities = 78/89 (87%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaa-caattgtat-agagaggtatacacttgt---aa 67
|||||||||||||||||||||||||| ||||||||| | | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 60
Query: 68 atatgcgtgtgctcacttctcttgctgtc 96
||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>46709_miR156:micropc
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctcttgctgtca 97
|||||||||||||||||||||| ||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtca 90
>46153_miR156:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaacaattgtata 48
||||||||||||||||||| | ||| |||||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcacacaattgtata 37
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgcgtgtgctcacttctcttgctgtca 97
|||||||||||||||||||| ||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtca 92
>45524_miR156:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgcaaacaattgtata 48
||||||||||||||||||| | ||| |||||||||||
Sbjct: 1 tgacagaagagagtgagcacacgcacacaattgtata 37
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgcgtgtgctcacttctcttgctgtca 97
|||||||||||||||||||| ||||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtca 92
>45385_miR156:micropc
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctcttgctgtca 97
|||||||||||||||||||||| ||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtca 90
>45182_miR156:micropc
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctcttgctgtca 97
|||||||||||||||||||||| ||||||
Sbjct: 62 tatgcgtgtgctcacttctctttctgtca 90
>46803_miR156:micropc
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctcttgctgtc 96
|||||||||||||||||||||| |||||
Sbjct: 61 tatgcgtgtgctcacttctctttctgtc 88
>46707_miR156:micropc
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaacaattgtata 48
|||||||||||||||||| | ||| |||||||||||
Sbjct: 1 gacagaagagagtgagcacacgcacacaattgtata 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgcgtgtgctcacttctcttgctgtc 96
|||||||||||||||||||| |||||
Sbjct: 65 tgcgtgtgctcacttctctttctgtc 90
>46069_miR156:micropc
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctcttgctgtc 96
|||||||||||||||||||||| |||||
Sbjct: 61 tatgcgtgtgctcacttctctttctgtc 88
>46842_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctctt 90
||||||||||||||||||||||
Sbjct: 59 tatgcgtgtgctcacttctctt 80
>46146_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctctt 90
||||||||||||||||||||||
Sbjct: 59 tatgcgtgtgctcacttctctt 80
>46066_miR156:micropc
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 15 cagaagagagtgagcatatgcaaacaattgtata 48
|||||||||||||||| | ||| |||||||||||
Sbjct: 1 cagaagagagtgagcacacgcacacaattgtata 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 tgcgtgtgctcacttctctt 90
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
>44793_miR156:micropc
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tatgcgtgtgctcacttctctt 90
||||||||||||||||||||||
Sbjct: 61 tatgcgtgtgctcacttctctt 82
>46151_miR156:micropc
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 13 gacagaagagagtgagcatatgcaaacaattgtatag 49
||||||||||||||||||| ||| |||||||||||
Sbjct: 1 gacagaagagagtgagcatccgcaggcaattgtatag 37
>46794_miR156:micropc
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgc 35
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagtgagcacatgc 24
>45863_miR156:micropc
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcatatgc 35
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagtgagcacatgc 24
