miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46637_miR446:micropc
Length = 80
Score = 159 bits (80), Expect = 5e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 12 ttcctagttcatattaatgttaatgaatctagacatatatatctagctagattcattaac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcctagttcatattaatgttaatgaatctagacatatatatctagctagattcattaac 60
Query: 72 atcaatatgaatatgggaaa 91
||||||||||||||||||||
Sbjct: 61 atcaatatgaatatgggaaa 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| |||||||||||||||| | |||||| | |||||||||||||||| ||||
Sbjct: 71 ttcatattgatgttaatgaatctagctagatatatatgtctagattcattaacattaata 12
Query: 79 tgaa 82
||||
Sbjct: 11 tgaa 8
>46801_miR809:micropc
Length = 110
Score = 99.6 bits (50), Expect = 4e-22
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 22 atattaatgttaatgaatctagacatatatatctagctagattcattaacatcaatatga 81
||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct: 79 atattgatgttaatgaatctaaacatatatatctatctagattcattaacattaatatga 20
Query: 82 atatgggaaa 91
|| |||||||
Sbjct: 19 atgtgggaaa 10
Score = 73.8 bits (37), Expect = 2e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||
Sbjct: 19 ttcatattaatgttaatgaatctagatagatatatatgtttagattcattaacatcaata 78
Query: 79 t 79
|
Sbjct: 79 t 79
>46758_miR808:micropc
Length = 98
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 18 ttcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaata 77
Query: 79 tgaatatgggaaa 91
|||||||||||||
Sbjct: 78 tgaatatgggaaa 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||||||||||||||||||||| |||||| | |||||||| ||| ||||||||
Sbjct: 81 ttcatattaatgttaatgaatctagatggatatatatgtctagattcgttagcatcaata 22
Query: 79 tgaatatgggaaa 91
|||||||| ||||
Sbjct: 21 tgaatatgagaaa 9
>45708_miR809:micropc
Length = 100
Score = 97.6 bits (49), Expect = 1e-21
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 22 atattaatgttaatgaatctagacatatatatctagctagattcattaacatcaatatga 81
||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 79 atattgatgctaatgaatctagacatatatatctatctagattcattaatatcaatatga 20
Query: 82 atatg 86
|||||
Sbjct: 19 atatg 15
Score = 60.0 bits (30), Expect = 3e-10
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| || |||||||||||||| | |||||| | |||||||||||| ||||||||
Sbjct: 19 ttcatattgatattaatgaatctagatagatatatatgtctagattcattagcatcaata 78
Query: 79 tgaatatgggaaaatgtagaat 100
| ||| || |||| | ||||||
Sbjct: 79 taaatgtgagaaattttagaat 100
>45342_miR809:micropc
Length = 100
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 19 ttcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaata 78
Query: 79 tgaatatgggaaa 91
|||||||||||||
Sbjct: 79 tgaatatgggaaa 91
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||||||||||||||||||||| |||||| | |||||||| ||| ||||||||
Sbjct: 82 ttcatattaatgttaatgaatctagatggatatatatgtctagattcgttagcatcaata 23
Query: 79 tgaatatgggaaa 91
|||||||| ||||
Sbjct: 22 tgaatatgagaaa 10
>46833_miR446:micropc
Length = 81
Score = 91.7 bits (46), Expect = 9e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 22 atattaatgttaatgaatctagacatatatatctagctagattcattaacatcaatatga 81
||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct: 10 atattgatgttaatgaatctagacatacatatctatctaaattcattaacatcaatatga 69
Query: 82 at 83
||
Sbjct: 70 at 71
Score = 58.0 bits (29), Expect = 1e-09
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| |||||||||||| |||| | |||| | | |||||||||||||||||||||
Sbjct: 70 ttcatattgatgttaatgaatttagatagatatgtatgtctagattcattaacatcaata 11
Query: 79 t 79
|
Sbjct: 10 t 10
>46318_miR446:micropc
Length = 86
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| | |||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 75 ttcatattgacgttaataaatctagacatatatatctatatagattcattaacatcatta 16
Query: 79 tgaatatgggaaa 91
| |||||||||||
Sbjct: 15 taaatatgggaaa 3
Score = 56.0 bits (28), Expect = 5e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
||||||||||||||| | | |||||| | ||||||| |||||| ||||||||||||| |
Sbjct: 21 atgttaatgaatctatatagatatatatgtctagatttattaacgtcaatatgaatatag 80
Query: 88 gaaa 91
||||
Sbjct: 81 gaaa 84
>45522_miR809:micropc
Length = 100
Score = 87.7 bits (44), Expect = 1e-18
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
|||||||||||||||||||||| |||||| ||||||||||||||||||| | |||| |||
Sbjct: 28 atgttaatgaatctagacatatgtatctatctagattcattaacatcaacacgaatgtgg 87
Query: 88 gaaa 91
||||
Sbjct: 88 gaaa 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatca 75
||||||||||||||||| | ||| || | ||||||||||||||||||
Sbjct: 73 atgttaatgaatctagatagatacatatgtctagattcattaacatca 26
>46080_miR809:micropc
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| ||| |||||||| |||||||||||||||| ||||| |||| | ||||||||
Sbjct: 81 ttcatattgatggtaatgaatatagacatatatatctatctaga-tcatcagcatcaata 23
Query: 79 tgaatatgggaaa 91
||||| |||||||
Sbjct: 22 tgaatgtgggaaa 10
>45707_miR809:micropc
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| ||| |||||||| |||||||||||||||| ||||| |||| | ||||||||
Sbjct: 81 ttcatattgatggtaatgaatatagacatatatatctatctaga-tcatcagcatcaata 23
Query: 79 tgaatatgggaaa 91
||||| |||||||
Sbjct: 22 tgaatgtgggaaa 10
>46775_miR808:micropc
Length = 98
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaa 76
|||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct: 81 ttcatattgatgttaatgaatctaaa-atatatatctatctagatttattaacatcaa 25
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 tagattcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||||||| |||||||
Sbjct: 58 tagattcattaacatcaatatgaatgtgggaaa 90
>45995_miR446:micropc
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaa 76
|||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct: 75 ttcatattgatgttaatgaatctaaa-atatatatctatctagatttattaacatcaa 19
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 tagattcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||||||| |||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaa 84
>45913_miR809:micropc
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaa 76
|||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct: 82 ttcatattgatgttaatgaatctaaa-atatatatctatctagatttattaacatcaa 26
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 tagattcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||||||| |||||||
Sbjct: 59 tagattcattaacatcaatatgaatgtgggaaa 91
>45731_miR446:micropc
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 31 ttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatggg 88
|||||||||||| |||||||| | | |||||||||||||||||||||||||| ||||
Sbjct: 24 ttaatgaatctaaacatatatgtgtgtctagattcattaacatcaatatgaatgtggg 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| ||||||||||||||||||| | |||| | |||||||||||| ||| |||
Sbjct: 75 ttcatattgatgttaatgaatctagacacacatatatgtttagattcattaaaatctata 16
Query: 79 tgaat 83
|||||
Sbjct: 15 tgaat 11
>45717_miR446:micropc
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaa 76
|||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct: 75 ttcatattgatgttaatgaatctaaa-atatatatctatctagatttattaacatcaa 19
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 tagattcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||||||| |||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaa 84
>45176_miR446:micropc
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaa 76
|||||||| ||||||||||||||| | ||||||||||| ||||||| |||||||||||
Sbjct: 75 ttcatattgatgttaatgaatctaaa-atatatatctatctagatttattaacatcaa 19
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 tagattcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||||||| |||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaa 84
>46589_miR809:micropc
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 18 gttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatca 75
|||||||| || |||||||||||| | ||||||||||| ||||||| ||||||||||
Sbjct: 83 gttcatatcgatattaatgaatctaaaaatatatatctatctagatttattaacatca 26
>46060_miR809:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 58 ctagattcattaacatcaatatgaatatgg 87
||||||||||||||||||||||||||||||
Sbjct: 43 ctagattcattaacatcaatatgaatatgg 14
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagac 45
|||||||| ||||||||||||||||||
Sbjct: 19 ttcatattgatgttaatgaatctagac 45
>46464_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 1e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 30 gttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatg 86
||||||||||||| ||| |||||| | ||||||||||||| ||| |||||||||||
Sbjct: 95 gttaatgaatctaaacacatatatatgcctagattcattaatatctatatgaatatg 39
Score = 52.0 bits (26), Expect = 8e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 31 ttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatggg 88
||||||||||||| ||||||||| | ||||||||||||| || |||| ||||||||
Sbjct: 55 ttaatgaatctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
>45514_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 1e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 30 gttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatg 86
||||||||||||| ||| |||||| | ||||||||||||| ||| |||||||||||
Sbjct: 95 gttaatgaatctaaacacatatatatgcctagattcattaatatctatatgaatatg 39
Score = 52.0 bits (26), Expect = 8e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 31 ttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatggg 88
||||||||||||| ||||||||| | ||||||||||||| || |||| ||||||||
Sbjct: 55 ttaatgaatctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
>45099_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 1e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 30 gttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatg 86
||||||||||||| ||| |||||| | ||||||||||||| ||| |||||||||||
Sbjct: 95 gttaatgaatctaaacacatatatatgcctagattcattaatatctatatgaatatg 39
Score = 52.0 bits (26), Expect = 8e-08
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 31 ttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatggg 88
||||||||||||| ||||||||| | ||||||||||||| || |||| ||||||||
Sbjct: 55 ttaatgaatctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
>46336_miR809:micropc
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| || ||||||||||||||||| ||||||| || |||||| || |||||||
Sbjct: 80 ttcatatttatattaatgaatctagacat--atatctatttaaattcatcaatatcaata 23
Query: 79 tgaatatgg 87
| |||||||
Sbjct: 22 taaatatgg 14
>45839_miR809:micropc
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
|||||||| || ||||||||||||||||| ||||||| || |||||| || |||||||
Sbjct: 80 ttcatatttatattaatgaatctagacat--atatctatttaaattcatcaatatcaata 23
Query: 79 tgaatatgg 87
| |||||||
Sbjct: 22 taaatatgg 14
>45260_miR819:micropc
Length = 116
Score = 52.0 bits (26), Expect = 8e-08
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
||||||| ||||||||||||||| |||||||| | | ||| ||||||||||||| |||
Sbjct: 28 ttcatatatatgttaatgaatctaaacatatatgtgt--ctatattcattaacatctata 85
Query: 79 tgaatatgg 87
| |||||||
Sbjct: 86 taaatatgg 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
|||||||||||| |||||| |||||| | ||||||||||||||| ||||||||||||
Sbjct: 80 atgttaatgaatatagacacatatatgtt--tagattcattaacatatatatgaatatgg 23
>45075_miR819:micropc
Length = 116
Score = 52.0 bits (26), Expect = 8e-08
Identities = 59/69 (85%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 78
||||||| ||||||||||||||| |||||||| | | ||| ||||||||||||| |||
Sbjct: 28 ttcatatatatgttaatgaatctaaacatatatgtgt--ctatattcattaacatctata 85
Query: 79 tgaatatgg 87
| |||||||
Sbjct: 86 taaatatgg 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 52/60 (86%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
|||||||||||| |||||| |||||| | ||||||||||||||| ||||||||||||
Sbjct: 80 atgttaatgaatatagacacatatatgtt--tagattcattaacatatatatgaatatgg 23
>46468_miR446:micropc
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ttcattaacatcaatatgaatatgggaaa 91
||||||||||||||||||||| |||||||
Sbjct: 48 ttcattaacatcaatatgaatgtgggaaa 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 63 ttcattaacatcaatatgaatatgggaaa 91
||||||||||||||||| ||| |||||||
Sbjct: 30 ttcattaacatcaatataaatgtgggaaa 2
>46670_miR809:micropc
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatc 74
||||||| |||||||||||| ||||||||||| | | ||||||| |||||||||
Sbjct: 80 ttcatatatatgttaatgaatgtagacatatatgtgtgtctagatttattaacatc 25
Score = 42.1 bits (21), Expect = 7e-05
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
|||||||| |||||||||| | |||| | ||| |||||||||||| |||||||| |||
Sbjct: 26 atgttaataaatctagacacacatatatgtctacattcattaacatatatatgaatgtgg 85
Query: 88 g 88
|
Sbjct: 86 g 86
>44980_miR808:micropc
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 19 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatc 74
||||||| |||||||||||| ||||||||||| | | ||||||| |||||||||
Sbjct: 80 ttcatatatatgttaatgaatgtagacatatatgtgtgtctagatttattaacatc 25
Score = 42.1 bits (21), Expect = 7e-05
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 28 atgttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatgg 87
|||||||| |||||||||| | |||| | ||| |||||||||||| |||||||| |||
Sbjct: 26 atgttaataaatctagacacacatatatgtctacattcattaacatatatatgaatgtgg 85
Query: 88 g 88
|
Sbjct: 86 g 86
