miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45342_miR809:micropc
Length = 100
Score = 198 bits (100), Expect = 1e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 42 attctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatcta 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatcta 60
Query: 102 gattcattaacattaatatgaatatgggaaatgttagaat 141
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gattcattaacattaatatgaatatgggaaatgttagaat 100
Score = 60.0 bits (30), Expect = 6e-10
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| |||||||||||| ||| ||| ||||||||| |||||| ||||||||| |
Sbjct: 93 catttcccatattcatattaatgttaatgaatctagatggatatatatgtctagattcgt 34
Query: 109 taacattaatatgaatatgggaaatg 134
|| ||| |||||||||||| ||||||
Sbjct: 33 tagcatcaatatgaatatgagaaatg 8
>46758_miR808:micropc
Length = 98
Score = 194 bits (98), Expect = 2e-50
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 43 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatctag 60
Query: 103 attcattaacattaatatgaatatgggaaatgttagaa 140
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcattaacattaatatgaatatgggaaatgttagaa 98
Score = 60.0 bits (30), Expect = 6e-10
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| |||||||||||| ||| ||| ||||||||| |||||| ||||||||| |
Sbjct: 92 catttcccatattcatattaatgttaatgaatctagatggatatatatgtctagattcgt 33
Query: 109 taacattaatatgaatatgggaaatg 134
|| ||| |||||||||||| ||||||
Sbjct: 32 tagcatcaatatgaatatgagaaatg 7
>45708_miR809:micropc
Length = 100
Score = 119 bits (60), Expect = 8e-28
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 50 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 109
|||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 92 atttctcacatttatattgatgctaatgaatctagacatatatatctatctagattcatt 33
Query: 110 aacattaatatgaatatgggaaatgttagaat 141
|| || |||||||||||| ||||||||||||
Sbjct: 32 aatatcaatatgaatatgaaaaatgttagaat 1
Score = 65.9 bits (33), Expect = 1e-11
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
||||| |||||||||||||||| ||| ||||||||| | |||||| |||||||||||
Sbjct: 8 catttttcatattcatattgatattaatgaatctagatagatatatatgtctagattcat 67
Query: 109 taacattaatatgaatatgggaaatgttagaat 141
|| ||| ||||| ||| || ||||| |||||||
Sbjct: 68 tagcatcaatataaatgtgagaaattttagaat 100
>46801_miR809:micropc
Length = 110
Score = 109 bits (55), Expect = 7e-25
Identities = 73/79 (92%)
Strand = Plus / Minus
Query: 63 atattgatgctaacgaatctagacatatatatccatctagattcattaacattaatatga 122
||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 79 atattgatgttaatgaatctaaacatatatatctatctagattcattaacattaatatga 20
Query: 123 atatgggaaatgttagaat 141
|| ||||||||| ||||||
Sbjct: 19 atgtgggaaatgatagaat 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||| ||| ||| ||||||||| | |||||| | |||||||||
Sbjct: 8 catttcccacattcatattaatgttaatgaatctagatagatatatatgtttagattcat 67
Query: 109 taacattaatat 120
|||||| |||||
Sbjct: 68 taacatcaatat 79
>46637_miR446:micropc
Length = 80
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 60 ttcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaata 119
|||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||| ||||
Sbjct: 8 ttcatattaatgttaatgaatctagacatatatatctagctagattcattaacatcaata 67
Query: 120 tgaatatgggaaa 132
|||||||||||||
Sbjct: 68 tgaatatgggaaa 80
Score = 73.8 bits (37), Expect = 4e-14
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 51 tttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatta 110
|||| |||||||||||||||| ||| |||||||| | |||||| |||||||||||||
Sbjct: 80 tttcccatattcatattgatgttaatgaatctagctagatatatatgtctagattcatta 21
Query: 111 acattaatatgaa 123
|||||||||||||
Sbjct: 20 acattaatatgaa 8
>46080_miR809:micropc
Length = 99
Score = 87.7 bits (44), Expect = 3e-18
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 42 attctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatcta 101
||||| |||||||||| ||||||||||||| ||| |||| |||||||||||||| |||||
Sbjct: 99 attctagcatttctcacattcatattgatggtaatgaatatagacatatatatctatcta 40
Query: 102 gattcattaacattaatatgaatatgggaaat 133
|| |||| | ||| ||||||||| ||||||||
Sbjct: 39 ga-tcatcagcatcaatatgaatgtgggaaat 9
Score = 48.1 bits (24), Expect = 2e-06
Identities = 76/92 (82%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 50 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 109
||||| || ||||||||||||||| | | ||||||| | |||||| |||| |||||||
Sbjct: 9 atttcccacattcatattgatgctgatg-atctagatagatatatatgtctatattcatt 67
Query: 110 aacattaatatgaatatgggaaatgttagaat 141
| ||| ||||||||| || |||||| ||||||
Sbjct: 68 accatcaatatgaatgtgagaaatgctagaat 99
>45707_miR809:micropc
Length = 99
Score = 87.7 bits (44), Expect = 3e-18
Identities = 81/92 (88%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 42 attctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatcta 101
||||| |||||||||| ||||||||||||| ||| |||| |||||||||||||| |||||
Sbjct: 99 attctagcatttctcacattcatattgatggtaatgaatatagacatatatatctatcta 40
Query: 102 gattcattaacattaatatgaatatgggaaat 133
|| |||| | ||| ||||||||| ||||||||
Sbjct: 39 ga-tcatcagcatcaatatgaatgtgggaaat 9
Score = 48.1 bits (24), Expect = 2e-06
Identities = 76/92 (82%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 50 atttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcatt 109
||||| || ||||||||||||||| | | ||||||| | |||||| |||| |||||||
Sbjct: 9 atttcccacattcatattgatgctgatg-atctagatagatatatatgtctatattcatt 67
Query: 110 aacattaatatgaatatgggaaatgttagaat 141
| ||| ||||||||| || |||||| ||||||
Sbjct: 68 accatcaatatgaatgtgagaaatgctagaat 99
>46318_miR446:micropc
Length = 86
Score = 83.8 bits (42), Expect = 4e-17
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 57 atattcatattgatgctaacgaatctagacatatatatccatctagattcattaacatta 116
||||||||||||| | ||| |||||||||||||||||| || ||||||||||||||| |
Sbjct: 78 atattcatattgacgttaataaatctagacatatatatctatatagattcattaacatca 19
Query: 117 atatgaatatgggaaatg 134
||| |||||||||||||
Sbjct: 18 ttataaatatgggaaatg 1
Score = 52.0 bits (26), Expect = 1e-07
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| |||||| ||| ||||| ||| ||||||| | | |||||| |||||||| ||
Sbjct: 1 catttcccatatttataatgatgttaatgaatctatatagatatatatgtctagatttat 60
Query: 109 taacattaatatgaatatgggaaatg 134
|||| | ||||||||||| |||||||
Sbjct: 61 taacgtcaatatgaatataggaaatg 86
>46833_miR446:micropc
Length = 81
Score = 79.8 bits (40), Expect = 7e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 63 atattgatgctaacgaatctagacatatatatccatctagattcattaacattaatatga 122
||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||| |||||||
Sbjct: 10 atattgatgttaatgaatctagacatacatatctatctaaattcattaacatcaatatga 69
Query: 123 atatgggaaatg 134
|| ||| |||||
Sbjct: 70 atgtggaaaatg 81
Score = 44.1 bits (22), Expect = 4e-05
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 59 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 118
||||||||||||| ||| |||| |||| | |||| | ||||||||||||||||| |||
Sbjct: 71 attcatattgatgttaatgaatttagatagatatgtatgtctagattcattaacatcaat 12
Query: 119 at 120
||
Sbjct: 11 at 10
>45522_miR809:micropc
Length = 100
Score = 79.8 bits (40), Expect = 7e-16
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 42 attctggcatttctcatattcatattgatgctaacgaatctagacatatatatccatcta 101
||||| |||||| || |||| || ||||| ||| |||||||||||||| |||| |||||
Sbjct: 1 attctagcattttccacattcgtaatgatgttaatgaatctagacatatgtatctatcta 60
Query: 102 gattcattaacattaatatgaatatgggaaatgttagaat 141
||||||||||||| || | |||| ||||||||| ||||||
Sbjct: 61 gattcattaacatcaacacgaatgtgggaaatgatagaat 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 75/93 (80%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || |||| | |||||| ||| ||||||||| | ||| || |||||||||||
Sbjct: 93 catttcccacattcgtgttgatgttaatgaatctagatagatacatatgtctagattcat 34
Query: 109 taacattaatatgaatatgggaaatgttagaat 141
|||||| | || |||| ||| ||||| ||||||
Sbjct: 33 taacatcattacgaatgtggaaaatgctagaat 1
>45913_miR809:micropc
Length = 100
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 100 tagattcattaacattaatatgaatatgggaaatgttagaat 141
||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 59 tagattcattaacatcaatatgaatgtgggaaatgttagaat 100
Score = 60.0 bits (30), Expect = 6e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 93 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 35
Query: 109 taacat 114
||||||
Sbjct: 34 taacat 29
>46775_miR808:micropc
Length = 98
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 100 tagattcattaacattaatatgaatatgggaaatgttagaa 140
||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 58 tagattcattaacatcaatatgaatgtgggaaatgttagaa 98
Score = 60.0 bits (30), Expect = 6e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 92 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 34
Query: 109 taacat 114
||||||
Sbjct: 33 taacat 28
>46060_miR809:micropc
Length = 87
Score = 63.9 bits (32), Expect = 4e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 98 tctagattcattaacattaatatgaatatgggaaatgttagaat 141
||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 44 tctagattcattaacatcaatatgaatatggaaaatgctagaat 1
Score = 50.1 bits (25), Expect = 6e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 42 attctggcatttctcatattcatattgatgctaacgaatctagac 86
||||| |||||| |||||||||||||||| ||| ||||||||||
Sbjct: 1 attctagcattttccatattcatattgatgttaatgaatctagac 45
>45995_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 6e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 109 taacat 114
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 tagattcattaacattaatatgaatatgggaaatg 134
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>45717_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 6e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 109 taacat 114
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 tagattcattaacattaatatgaatatgggaaatg 134
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>45176_miR446:micropc
Length = 86
Score = 60.0 bits (30), Expect = 6e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 49 catttctcatattcatattgatgctaacgaatctagacatatatatccatctagattcat 108
|||||| || ||||||||||||| ||| ||||||| | ||||||||| ||||||||| ||
Sbjct: 86 catttcccacattcatattgatgttaatgaatcta-aaatatatatctatctagatttat 28
Query: 109 taacat 114
||||||
Sbjct: 27 taacat 22
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 100 tagattcattaacattaatatgaatatgggaaatg 134
||||||||||||||| ||||||||| |||||||||
Sbjct: 52 tagattcattaacatcaatatgaatgtgggaaatg 86
>46464_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 21 ctccgttttacaatgtaagtcattctggcatttctcatattcatattgatgctaacgaat 80
|||||||| ||||||||| | |||| ||||| | ||||||||||| ||| ||| ||||
Sbjct: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
Query: 81 ctagacatatatatccatctagattcattaacattaatatgaatatggg 129
|||| ||||||||| | ||||||||||||| | |||| ||||||||
Sbjct: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 99 ctagattcattaacattaatatgaatatgggaaatgttagaatgacttacattgtgaaac 158
||||||||||||| || ||||||||||| | |||| ||||| | ||||||||||||||
Sbjct: 67 ctagattcattaatatctatatgaatatgtgcaatgctagaaagtattacattgtgaaac 8
>45514_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 21 ctccgttttacaatgtaagtcattctggcatttctcatattcatattgatgctaacgaat 80
|||||||| ||||||||| | |||| ||||| | ||||||||||| ||| ||| ||||
Sbjct: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
Query: 81 ctagacatatatatccatctagattcattaacattaatatgaatatggg 129
|||| ||||||||| | ||||||||||||| | |||| ||||||||
Sbjct: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 99 ctagattcattaacattaatatgaatatgggaaatgttagaatgacttacattgtgaaac 158
||||||||||||| || ||||||||||| | |||| ||||| | ||||||||||||||
Sbjct: 67 ctagattcattaatatctatatgaatatgtgcaatgctagaaagtattacattgtgaaac 8
>45099_miR1132:micropc
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 89/109 (81%)
Strand = Plus / Plus
Query: 21 ctccgttttacaatgtaagtcattctggcatttctcatattcatattgatgctaacgaat 80
|||||||| ||||||||| | |||| ||||| | ||||||||||| ||| ||| ||||
Sbjct: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
Query: 81 ctagacatatatatccatctagattcattaacattaatatgaatatggg 129
|||| ||||||||| | ||||||||||||| | |||| ||||||||
Sbjct: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 99 ctagattcattaacattaatatgaatatgggaaatgttagaatgacttacattgtgaaac 158
||||||||||||| || ||||||||||| | |||| ||||| | ||||||||||||||
Sbjct: 67 ctagattcattaatatctatatgaatatgtgcaatgctagaaagtattacattgtgaaac 8
>45731_miR446:micropc
Length = 86
Score = 56.0 bits (28), Expect = 9e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 59 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 118
|||||||| ||| ||| ||||||| |||||||| | ||||||||||||||||| |||
Sbjct: 11 attcatatagattttaatgaatctaaacatatatgtgtgtctagattcattaacatcaat 70
Query: 119 atgaatatgggaaatg 134
|||||| |||| ||||
Sbjct: 71 atgaatgtgggcaatg 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 59 attcatattgatgctaacgaatctagacatatatatccatctagattcattaacattaat 118
||||||||||||| ||| ||||||||||| | |||| | |||||||||||| || ||
Sbjct: 76 attcatattgatgttaatgaatctagacacacatatatgtttagattcattaaaatctat 17
Query: 119 atgaat 124
||||||
Sbjct: 16 atgaat 11
