miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46748_miR806:micropc
Length = 187
Score = 224 bits (113), Expect = 2e-59
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 30 tactattgatcttttaacacatgtttgaccgttcatcttattcaaaaacttttgtaaaat 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactattgatcttttaacacatgtttgaccgttcatcttattcaaaaacttttgtaaaat 60
Query: 90 atgtaaaactatacgtatgcataaaagtatatttaacaatgaatcaaattata 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgtaaaactatacgtatgcataaaagtatatttaacaatgaatcaaattata 113
Score = 50.1 bits (25), Expect = 8e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 41 ttttaacacatgtttgaccgttcatcttattcaaaaa 77
||||| |||||||||||||| || |||||||||||||
Sbjct: 176 ttttagcacatgtttgaccgctcgtcttattcaaaaa 140
>46603_miR806:micropc
Length = 188
Score = 115 bits (58), Expect = 2e-26
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 41 ttttaacacatgtttgaccgttcatcttattcaaaaacttttgtaaaatatgtaaaacta 100
||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 177 ttttagcacatatttaaccgttcatcttattcaaaaacttttgtgaaatatgtaaaatta 118
Query: 101 tacgtatgcataaaagtatatttaacaatgaatcaaat 138
|| | ||||| ||| ||||||||||||||||||||||
Sbjct: 117 tatgcctgcatgaaaatatatttaacaatgaatcaaat 80
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 cacatgtttgaccgttcatcttattcaaaaa 77
||||||||||||||||| |||||||||||||
Sbjct: 19 cacatgtttgaccgttcgtcttattcaaaaa 49
>46529_miR806:micropc
Length = 188
Score = 115 bits (58), Expect = 2e-26
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 41 ttttaacacatgtttgaccgttcatcttattcaaaaacttttgtaaaatatgtaaaacta 100
||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 177 ttttagcacatatttaaccgttcatcttattcaaaaacttttgtgaaatatgtaaaatta 118
Query: 101 tacgtatgcataaaagtatatttaacaatgaatcaaat 138
|| | ||||| ||| ||||||||||||||||||||||
Sbjct: 117 tatgcctgcatgaaaatatatttaacaatgaatcaaat 80
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 cacatgtttgaccgttcatcttattcaaaaa 77
||||||||||||||||| |||||||||||||
Sbjct: 19 cacatgtttgaccgttcgtcttattcaaaaa 49
>45954_miR806:micropc
Length = 188
Score = 115 bits (58), Expect = 2e-26
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 41 ttttaacacatgtttgaccgttcatcttattcaaaaacttttgtaaaatatgtaaaacta 100
||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 177 ttttagcacatatttaaccgttcatcttattcaaaaacttttgtgaaatatgtaaaatta 118
Query: 101 tacgtatgcataaaagtatatttaacaatgaatcaaat 138
|| | ||||| ||| ||||||||||||||||||||||
Sbjct: 117 tatgcctgcatgaaaatatatttaacaatgaatcaaat 80
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 cacatgtttgaccgttcatcttattcaaaaa 77
||||||||||||||||| |||||||||||||
Sbjct: 19 cacatgtttgaccgttcgtcttattcaaaaa 49
