miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46704_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>46368_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>46346_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>45631_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>45023_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>44935_miR530:micropc
Length = 137
Score = 272 bits (137), Expect = 9e-74
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 32 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgctt 60
Query: 92 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcgctatacgctagcttcttgcacccatgttggtccctggccccttcctgatccctag 120
Query: 152 gtgccaaggcagatgca 168
|||||||||||||||||
Sbjct: 121 gtgccaaggcagatgca 137
>45414_miR530:micropc
Length = 141
Score = 202 bits (102), Expect = 7e-53
Identities = 134/142 (94%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 30 gctgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgc 89
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgc 60
Query: 90 ttgatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatccc 148
|||||||||||||||||||||||||||| | ||||| || ||||| ||||||||||||||
Sbjct: 61 ttgatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatccc 119
Query: 149 taggtgccaaggcagatgcaac 170
||||||| |||||||||||||
Sbjct: 120 taggtgcagaggcagatgcaac 141
>46800_miR1030:micropc
Length = 138
Score = 196 bits (99), Expect = 4e-51
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 31 ctgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgct 90
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
Query: 91 tgatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatccct 149
||||||||||||||||||||||||||| | ||||| || ||||| |||||||||||||||
Sbjct: 61 tgatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatccct 119
Query: 150 aggtgccaaggcagatgca 168
|||||| |||||||||||
Sbjct: 120 aggtgcagaggcagatgca 138
>45181_miR1030:micropc
Length = 138
Score = 196 bits (99), Expect = 4e-51
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 31 ctgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgct 90
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
Query: 91 tgatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatccct 149
||||||||||||||||||||||||||| | ||||| || ||||| |||||||||||||||
Sbjct: 61 tgatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatccct 119
Query: 150 aggtgccaaggcagatgca 168
|||||| |||||||||||
Sbjct: 120 aggtgcagaggcagatgca 138
>44806_miR1030:micropc
Length = 138
Score = 196 bits (99), Expect = 4e-51
Identities = 131/139 (94%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 31 ctgcatttgcacctgcacctacagagagggagatggagcagcaagctagcaatacgtgct 90
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacctacagagaggaagatggagcagcaagctagcaatacgtgct 60
Query: 91 tgatcgctatacgctagcttcttgcac-ccatgttggtccctggccccttcctgatccct 149
||||||||||||||||||||||||||| | ||||| || ||||| |||||||||||||||
Sbjct: 61 tgatcgctatacgctagcttcttgcacacaatgtt-gttcctggtcccttcctgatccct 119
Query: 150 aggtgccaaggcagatgca 168
|||||| |||||||||||
Sbjct: 120 aggtgcagaggcagatgca 138
>46019_miR1030:micropc
Length = 144
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ctgcatttgcacctgcacct 50
||||||||||||||||||||
Sbjct: 2 ctgcatttgcacctgcacct 21
>45875_miR1030:micropc
Length = 142
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ctgcatttgcacctgcacct 50
||||||||||||||||||||
Sbjct: 1 ctgcatttgcacctgcacct 20
>44837_miR1030:micropc
Length = 109
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 ctgcatttgcacctgcacct 50
||||||||||||||||||||
Sbjct: 109 ctgcatttgcacctgcacct 90
