miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46413_miR172:micropc
Length = 88
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 61
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 62 gtaatgagaatcttgatgatgctgca 87
>46305_miR172:micropc
Length = 88
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 61
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 62 gtaatgagaatcttgatgatgctgca 87
>45569_miR172:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86
>46677_miR172:micropc
Length = 88
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 62 gtaatgagaatcttgatgatgctgca 87
>46487_miR172:micropc
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 60
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86
>45392_miR172:micropc
Length = 88
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 61
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 62 gtaatgagaatcttgatgatgctgca 87
>44791_miR172:micropc
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggtcaatgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 tgcggcatcttcaagattcacatgccaatattcaactctagataagtttttggttaatgg 60
Query: 61 gtaatgagaatcttgatgatgctgca 86
||||||||||||||||||||||||||
Sbjct: 61 gtaatgagaatcttgatgatgctgca 86
>46569_miR172:micropc
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 atgagaatcttgatgatgctgca 86
|||||||||||||||||||||||
Sbjct: 104 atgagaatcttgatgatgctgca 126
>44866_miR172:micropc
Length = 128
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 atgagaatcttgatgatgctgca 86
|||||||||||||||||||||||
Sbjct: 105 atgagaatcttgatgatgctgca 127
>46276_miR172:micropc
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgagaatcttgatgatgctgca 86
||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgca 104
>46108_miR172:micropc
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgagaatcttgatgatgctgca 86
||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgca 104
>45323_miR172:micropc
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgagaatcttgatgatgctgca 86
||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgca 104
>46620_miR172:micropc
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gagaatcttgatgatgctgca 86
|||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgca 105
>46277_miR172:micropc
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gagaatcttgatgatgctgca 86
|||||||||||||||||||||
Sbjct: 84 gagaatcttgatgatgctgca 104
>45834_miR172:micropc
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gagaatcttgatgatgctgca 86
|||||||||||||||||||||
Sbjct: 84 gagaatcttgatgatgctgca 104
>45550_miR172:micropc
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gagaatcttgatgatgctgca 86
|||||||||||||||||||||
Sbjct: 84 gagaatcttgatgatgctgca 104
>45458_miR172:micropc
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 gagaatcttgatgatgctgca 86
|||||||||||||||||||||
Sbjct: 84 gagaatcttgatgatgctgca 104
>46634_miR172:micropc
Length = 150
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 19 gaatcttgatgatgctgca 1
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 131 gaatcttgatgatgctgca 149
>46120_miR172:micropc
Length = 150
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 19 gaatcttgatgatgctgca 1
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 131 gaatcttgatgatgctgca 149
>45430_miR172:micropc
Length = 149
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 19 gaatcttgatgatgctgca 1
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 gaatcttgatgatgctgca 86
|||||||||||||||||||
Sbjct: 131 gaatcttgatgatgctgca 149
