miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>45537_miR482:micropc
          Length = 81

 Score =  161 bits (81), Expect = 9e-41
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggaatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgttttctttcctt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgttttctttcctt 60

                               
Query: 61 ctttcctactcctcccattcc 81
          |||||||||||||||||||||
Sbjct: 61 ctttcctactcctcccattcc 81




>45951_miR482:micropc
          Length = 81

 Score =  111 bits (56), Expect = 8e-26
 Identities = 75/81 (92%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                      
Query: 3  aatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgt----tttctttcc 58
          |||||||||||||||||||||||| ||||||||||||||||||||||    |||||||| 
Sbjct: 1  aatgggaagataggaaagaaccaaagtgttgtcagaaacatctttgttttctttctttct 60

                               
Query: 59 ttctttcctactcctcccatt 79
          |||||||||||||||||||||
Sbjct: 61 ttctttcctactcctcccatt 81




>45015_miR482:micropc
          Length = 81

 Score =  111 bits (56), Expect = 8e-26
 Identities = 75/81 (92%), Gaps = 4/81 (4%)
 Strand = Plus / Plus

                                                                      
Query: 3  aatgggaagataggaaagaaccaaggtgttgtcagaaacatctttgt----tttctttcc 58
          |||||||||||||||||||||||| ||||||||||||||||||||||    |||||||| 
Sbjct: 1  aatgggaagataggaaagaaccaaagtgttgtcagaaacatctttgttttctttctttct 60

                               
Query: 59 ttctttcctactcctcccatt 79
          |||||||||||||||||||||
Sbjct: 61 ttctttcctactcctcccatt 81




>45979_miR482:micropc
          Length = 71

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 55 ttccttctttcctactcctcccattcc 81
          ||||||||| |||||||||||||||||
Sbjct: 45 ttccttcttgcctactcctcccattcc 71




>45881_miR482:micropc
          Length = 71

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 55 ttccttctttcctactcctcccattcc 81
          ||||||||| |||||||||||||||||
Sbjct: 45 ttccttcttgcctactcctcccattcc 71




>45229_miR482:micropc
          Length = 66

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 60 tctttcctactcctcccattcc 81
          ||||||||||||||||||||||
Sbjct: 45 tctttcctactcctcccattcc 66




>46769_miR482:micropc
          Length = 67

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 ttccttctttcctactcctcccatt 79
          ||||||||| |||||||||||||||
Sbjct: 43 ttccttcttgcctactcctcccatt 67




>46503_miR482:micropc
          Length = 67

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 ttccttctttcctactcctcccatt 79
          ||||||||| |||||||||||||||
Sbjct: 43 ttccttcttgcctactcctcccatt 67




>46388_miR482:micropc
          Length = 71

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 57 ccttctttcctactcctcccattcc 81
          ||||||| |||||||||||||||||
Sbjct: 47 ccttcttgcctactcctcccattcc 71




>45511_miR482:micropc
          Length = 71

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 57 ccttctttcctactcctcccattcc 81
          ||||||| |||||||||||||||||
Sbjct: 47 ccttcttgcctactcctcccattcc 71




>46004_miR482:micropc
          Length = 62

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 tctttcctactcctcccatt 79
          ||||||||||||||||||||
Sbjct: 43 tctttcctactcctcccatt 62




>46297_miR472:micropc
          Length = 85

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 60 tctttcctactcctcccat 78
          |||||||||||||||||||
Sbjct: 64 tctttcctactcctcccat 82




>46001_miR482:micropc
          Length = 74

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 59 ttctttcctactcctcccattcc 81
          |||||||||| ||||||||||||
Sbjct: 52 ttctttcctagtcctcccattcc 74




>45290_miR482:micropc
          Length = 78

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 60 tctttcctactcctcccat 78
          |||||||||||||||||||
Sbjct: 60 tctttcctactcctcccat 78