miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46096_miR162:micropc
Length = 87
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaaga 61
Query: 61 atcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||
Sbjct: 62 atcggtcgataaacctctgcatcca 86
>46511_miR162:micropc
Length = 89
Score = 75.8 bits (38), Expect = 4e-15
Identities = 79/89 (88%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga--atttggctgtg-gaagaacacaaag-c 56
||||||||||||||||||||||||||||||| |||| | |||| ||| |||||||| |
Sbjct: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 60
Query: 57 aagaatcggtcgataaacctctgcatcca 85
| |||||| ||||||||||||||||||||
Sbjct: 61 atgaatcgatcgataaacctctgcatcca 89
>45545_miR162:micropc
Length = 91
Score = 75.8 bits (38), Expect = 4e-15
Identities = 79/89 (88%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga--atttggctgtg-gaagaacacaaag-c 56
||||||||||||||||||||||||||||||| |||| | |||| ||| |||||||| |
Sbjct: 2 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 61
Query: 57 aagaatcggtcgataaacctctgcatcca 85
| |||||| ||||||||||||||||||||
Sbjct: 62 atgaatcgatcgataaacctctgcatcca 90
>46792_miR162:micropc
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaaga 60
|||| ||||||||||||||||||||||||||| ||| |||| || || || | |||||
Sbjct: 1 tggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaaga 58
Query: 61 atcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||
Sbjct: 59 atcggtcgataaacctctgcatcca 83
>44984_miR162:micropc
Length = 85
Score = 73.8 bits (37), Expect = 2e-14
Identities = 75/85 (88%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagcaaga 60
|||| ||||||||||||||||||||||||||| ||| |||| || || || | |||||
Sbjct: 2 tggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaaga 59
Query: 61 atcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||
Sbjct: 60 atcggtcgataaacctctgcatcca 84
>46549_miR162:micropc
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg 31
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 65 gaatcgatcgataaacctctgcatcca 91
>46504_miR162:micropc
Length = 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg 30
>46039_miR162:micropc
Length = 92
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg 31
>45921_miR162:micropc
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg 31
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 tcgataaacctctgcatcca 85
||||||||||||||||||||
Sbjct: 90 tcgataaacctctgcatcca 109
>45903_miR162:micropc
Length = 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg 30
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 64 gaatcgatcgataaacctctgcatcca 90
>45508_miR162:micropc
Length = 108
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg 30
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 tcgataaacctctgcatcca 85
||||||||||||||||||||
Sbjct: 89 tcgataaacctctgcatcca 108
>46456_miR162:micropc
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatctcttcctg 30
|||||||||||||||||||||||||||||
Sbjct: 4 ggaggcagcggttcatcgatctcttcctg 32
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 tcgataaacctctgcatcca 85
||||||||||||||||||||
Sbjct: 69 tcgataaacctctgcatcca 88
>45283_miR162:micropc
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatctcttcctg 30
|||||||||||||||||||||||||||||
Sbjct: 3 ggaggcagcggttcatcgatctcttcctg 31
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 tcgataaacctctgcatcca 85
||||||||||||||||||||
Sbjct: 68 tcgataaacctctgcatcca 87
>46628_miR162:micropc
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>46557_miR162:micropc
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaattt 35
|||| |||||||||||||||||| |||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattt 35
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>46470_miR162:micropc
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>46169_miR162:micropc
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>46026_miR162:micropc
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgaattt 35
|||| |||||||||||||||||| |||||||||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcctgaattt 36
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatcca 86
>45868_miR162:micropc
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45757_miR162:micropc
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatcca 86
>45617_miR162:micropc
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 61 gaatcggtcgataaacctctgcatcca 87
>45605_miR162:micropc
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45416_miR162:micropc
Length = 139
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45197_miR162:micropc
Length = 139
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45084_miR162:micropc
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>44890_miR162:micropc
Length = 141
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>44807_miR162:micropc
Length = 141
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||||||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>46676_miR162:micropc
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 aagcaagaatcggtcgataaacctctgcatcca 85
||||| |||||| ||||||||||||||||||||
Sbjct: 64 aagcatgaatcgatcgataaacctctgcatcca 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>46394_miR162:micropc
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 aagcaagaatcggtcgataaacctctgcatcca 85
||||| |||||| ||||||||||||||||||||
Sbjct: 63 aagcatgaatcgatcgataaacctctgcatcca 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>46364_miR162:micropc
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 aagcaagaatcggtcgataaacctctgcatcca 85
||||| |||||| ||||||||||||||||||||
Sbjct: 63 aagcatgaatcgatcgataaacctctgcatcca 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>44934_miR162:micropc
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 53 aagcaagaatcggtcgataaacctctgcatcca 85
||||| |||||| ||||||||||||||||||||
Sbjct: 64 aagcatgaatcgatcgataaacctctgcatcca 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>46817_miR162:micropc
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatcca 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>46597_miR162:micropc
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 65 gaatcgatcgataaacctctgcatcca 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>46457_miR162:micropc
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 83 gaatcgatcgataaacctctgcatcca 109
>46090_miR162:micropc
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 71 gaatcgatcgataaacctctgcatcca 97
>45991_miR162:micropc
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 81 gaatcgatcgataaacctctgcatcca 107
>45901_miR162:micropc
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 84 gaatcgatcgataaacctctgcatcca 110
>45749_miR162:micropc
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcca 98
>44845_miR162:micropc
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 gaatcggtcgataaacctctgcatcca 85
|||||| ||||||||||||||||||||
Sbjct: 80 gaatcgatcgataaacctctgcatcca 106
>45338_miR162:micropc
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 50 acaaagcaagaatcggtcgataaacctctgcatcca 85
|||| ||| |||||| ||||||| ||||||||||||
Sbjct: 77 acaacgcaggaatcgatcgataagcctctgcatcca 112
>45279_miR162:micropc
Length = 114
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 50 acaaagcaagaatcggtcgataaacctctgcatcca 85
|||| ||| |||||| ||||||| ||||||||||||
Sbjct: 78 acaacgcaggaatcgatcgataagcctctgcatcca 113
