miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46278_miR168:micropc
          Length = 138

 Score =  274 bits (138), Expect = 2e-74
 Identities = 138/138 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcttggtgcaggtcgggaactgattagcttcgcttgcatatgtacgtatatgttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgcttggtgcaggtcgggaactgattagcttcgcttgcatatgtacgtatatgttttct 60

                                                                       
Query: 61  ccttattatgctagatggcaagtcttgattggttgagatcggacagaagcgaattggatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccttattatgctagatggcaagtcttgattggttgagatcggacagaagcgaattggatc 120

                             
Query: 121 ccgccttgcatcaactga 138
           ||||||||||||||||||
Sbjct: 121 ccgccttgcatcaactga 138




>46343_miR168:micropc
          Length = 144

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 114 agcgaattggatcccgccttgcatcaactga 144



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>45952_miR168:micropc
          Length = 155

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 125 agcgaattggatcccgccttgcatcaactga 155



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tcgcttggtgcaggtcgggaactg 24
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>45700_miR168:micropc
          Length = 155

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 125 agcgaattggatcccgccttgcatcaactga 155



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tcgcttggtgcaggtcgggaactg 24
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>45119_miR168:micropc
          Length = 144

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 108 agcgaattggatcccgccttgcatcaactga 138
           |||||||||||||||||||||||||||||||
Sbjct: 114 agcgaattggatcccgccttgcatcaactga 144



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>46663_miR168:micropc
          Length = 88

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 59  gcgaattggatcccgccttgcatcaactga 88



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>46636_miR168:micropc
          Length = 141

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 112 gcgaattggatcccgccttgcatcaactga 141



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>46512_miR168:micropc
          Length = 88

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 59  gcgaattggatcccgccttgcatcaactga 88



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>46427_miR168:micropc
          Length = 88

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 59  gcgaattggatcccgccttgcatcaactga 88



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>46189_miR168:micropc
          Length = 88

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 59  gcgaattggatcccgccttgcatcaactga 88



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>45425_miR168:micropc
          Length = 141

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 112 gcgaattggatcccgccttgcatcaactga 141



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>45228_miR168:micropc
          Length = 141

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 112 gcgaattggatcccgccttgcatcaactga 141



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||| ||||
Sbjct: 1  tcgcttggtgcaggtcgggaaccgatt 27




>44967_miR168:micropc
          Length = 141

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 109 gcgaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||||
Sbjct: 112 gcgaattggatcccgccttgcatcaactga 141



 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||| ||||
Sbjct: 1  tcgcttggtgcaggtcgggaaccgatt 27




>46333_miR168:micropc
          Length = 118

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>45406_miR168:micropc
          Length = 118

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>45088_miR168:micropc
          Length = 118

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>44951_miR168:micropc
          Length = 118

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 111 gaattggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||||
Sbjct: 91  gaattggatcccgccttgcatcaactga 118



 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  tcgcttggtgcaggtcgggaactgatt 27
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>46038_miR168:micropc
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>45956_miR168:micropc
          Length = 100

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 75  attggatcccgccttgcatcaactga 100



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45301_miR168:micropc
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 79  attggatcccgccttgcatcaactga 104



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22




>44865_miR168:micropc
          Length = 100

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 113 attggatcccgccttgcatcaactga 138
           ||||||||||||||||||||||||||
Sbjct: 75  attggatcccgccttgcatcaactga 100



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46717_miR168:micropc
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tcgcttggtgcaggtcgggaactg 24
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 77  tcccgccttgcatcaactga 96




>46366_miR168:micropc
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  tcgcttggtgcaggtcgggaactg 24
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 77  tcccgccttgcatcaactga 96




>46098_miR168:micropc
          Length = 101

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggaact 23
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaact 23



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 82  tcccgccttgcatcaactga 101




>45758_miR168:micropc
          Length = 101

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  tcgcttggtgcaggtcgggaact 23
          |||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaact 23



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 82  tcccgccttgcatcaactga 101




>46522_miR168:micropc
          Length = 110

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 117 gatcccgccttgcatcaactga 138
           ||||||||||||||||||||||
Sbjct: 89  gatcccgccttgcatcaactga 110




>46406_miR168:micropc
          Length = 110

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  tcgcttggtgcaggtcgggaac 22
          ||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaac 22



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 117 gatcccgccttgcatcaactga 138
           ||||||||||||||||||||||
Sbjct: 89  gatcccgccttgcatcaactga 110




>46209_miR168:micropc
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 114 ttggatcccgccttgcatcaactga 138
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45664_miR168:micropc
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 114 ttggatcccgccttgcatcaactga 138
           |||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>45247_miR168:micropc
          Length = 134

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 114 ttggatcccgccttgcatcaactga 138
           |||| ||||||||||||||||||||
Sbjct: 110 ttgggtcccgccttgcatcaactga 134



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>44885_miR168:micropc
          Length = 134

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 114 ttggatcccgccttgcatcaactga 138
           |||| ||||||||||||||||||||
Sbjct: 110 ttgggtcccgccttgcatcaactga 134



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46666_miR168:micropc
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 106 tcccgccttgcatcaactga 125




>46411_miR168:micropc
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>46016_miR168:micropc
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 tcccgccttgcatcaactga 138
           ||||||||||||||||||||
Sbjct: 106 tcccgccttgcatcaactga 125




>45240_miR168:micropc
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  tcgcttggtgcaggtcggga 20
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20