miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46746_miR399:micropc
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 61

                                  
Query: 61 tagctgccaaaggagaattgccct 84
          ||||||||||||||||||||||||
Sbjct: 62 tagctgccaaaggagaattgccct 85




>45403_miR399:micropc
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 60

                                  
Query: 61 tagctgccaaaggagaattgccct 84
          ||||||||||||||||||||||||
Sbjct: 61 tagctgccaaaggagaattgccct 84




>45072_miR399:micropc
          Length = 86

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  agtgcgattctcctttggcaggaatttggtattctgctgttaaccagtctgctaaactga 61

                                  
Query: 61 tagctgccaaaggagaattgccct 84
          ||||||||||||||||||||||||
Sbjct: 62 tagctgccaaaggagaattgccct 85




>46617_miR399:micropc
          Length = 122

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 103 tgccaaaggagaattgccct 122




>46471_miR399:micropc
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 65 tgccaaaggagaattgccct 84
          ||||||||||||||||||||
Sbjct: 70 tgccaaaggagaattgccct 89




>46409_miR399:micropc
          Length = 112

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 93  tgccaaaggagaattgccct 112




>46133_miR399:micropc
          Length = 124

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 104 tgccaaaggagaattgccct 123




>45856_miR399:micropc
          Length = 124

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 104 tgccaaaggagaattgccct 123




>45711_miR399:micropc
          Length = 90

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 65 tgccaaaggagaattgccct 84
          ||||||||||||||||||||
Sbjct: 70 tgccaaaggagaattgccct 89




>45532_miR399:micropc
          Length = 114

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 94  tgccaaaggagaattgccct 113




>45183_miR399:micropc
          Length = 114

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  tgccaaaggagaattgccct 84
           ||||||||||||||||||||
Sbjct: 94  tgccaaaggagaattgccct 113




>46699_miR399:micropc
          Length = 120

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  tgccaaaggagaattgccc 83
           |||||||||||||||||||
Sbjct: 102 tgccaaaggagaattgccc 120




>46490_miR399:micropc
          Length = 86

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 65 tgccaaaggagaattgccc 83
          |||||||||||||||||||
Sbjct: 68 tgccaaaggagaattgccc 86




>46173_miR399:micropc
          Length = 86

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 65 tgccaaaggagaattgccc 83
          |||||||||||||||||||
Sbjct: 68 tgccaaaggagaattgccc 86




>45456_miR399:micropc
          Length = 110

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  tgccaaaggagaattgccc 83
           |||||||||||||||||||
Sbjct: 92  tgccaaaggagaattgccc 110