miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46002_miR396:micropc
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttccactgtttgctgattaatacacggctcttgctagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttccactgtttgctgattaatacacggctcttgctagctag 60
Query: 61 gcgccgtatgtagacaccgcgcgccatgggagctcaagaaagctgtggga 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgccgtatgtagacaccgcgcgccatgggagctcaagaaagctgtggga 110
>45897_miR396:micropc
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttccactgtttgctgattaatacacggctcttgctagctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttccactgtttgctgattaatacacggctcttgctagctag 60
Query: 61 gcgccgtatgtagacaccgcgcgccatgggagctcaagaaagctgtggga 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcgccgtatgtagacaccgcgcgccatgggagctcaagaaagctgtggga 110
>46043_miR396:micropc
Length = 127
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 gcgccatgggagctcaagaaagctgtggga 110
||||||||| ||||||||||||||||||||
Sbjct: 98 gcgccatggaagctcaagaaagctgtggga 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>45837_miR396:micropc
Length = 127
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 gcgccatgggagctcaagaaagctgtggga 110
||||||||| ||||||||||||||||||||
Sbjct: 98 gcgccatggaagctcaagaaagctgtggga 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>44932_miR396:micropc
Length = 127
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 gcgccatgggagctcaagaaagctgtggga 110
||||||||| ||||||||||||||||||||
Sbjct: 98 gcgccatggaagctcaagaaagctgtggga 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>46615_miR396:micropc
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>46596_miR396:micropc
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>46563_miR396:micropc
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 catgggagctcaagaaagctgtggga 110
||||| ||||||||||||||||||||
Sbjct: 62 catggaagctcaagaaagctgtggga 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46258_miR396:micropc
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 catgggagctcaagaaagctgtggga 110
||||| ||||||||||||||||||||
Sbjct: 62 catggaagctcaagaaagctgtggga 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46105_miR396:micropc
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>45811_miR396:micropc
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>45455_miR396:micropc
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>45401_miR396:micropc
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 85 catgggagctcaagaaagctgtggga 110
||||| ||||||||||||||||||||
Sbjct: 62 catggaagctcaagaaagctgtggga 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>45190_miR396:micropc
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttc 22
>46607_miR396:micropc
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46537_miR396:micropc
Length = 68
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 gagctcaagaaagctgtggga 110
|||||||||||||||||||||
Sbjct: 48 gagctcaagaaagctgtggga 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46138_miR396:micropc
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>45713_miR396:micropc
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>45513_miR396:micropc
Length = 68
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 gagctcaagaaagctgtggga 110
|||||||||||||||||||||
Sbjct: 48 gagctcaagaaagctgtggga 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45195_miR396:micropc
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>45085_miR396:micropc
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>44970_miR396:micropc
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>44946_miR396:micropc
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>44938_miR396:micropc
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>44857_miR396:micropc
Length = 151
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46815_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46787_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46751_miR396:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46729_miR396:micropc
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46723_miR396:micropc
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46586_miR396:micropc
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 69 ttccacagctttcttgaact 88
>46571_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46556_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46393_miR396:micropc
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3 ccacagctttcttgaacttc 22
||||||||||||||||||||
Sbjct: 143 ccacagctttcttgaacttc 124
>46345_miR396:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46137_miR396:micropc
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46061_miR396:micropc
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 69 ttccacagctttcttgaact 88
>46059_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46014_miR396:micropc
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45980_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45961_miR396:micropc
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3 ccacagctttcttgaacttc 22
||||||||||||||||||||
Sbjct: 143 ccacagctttcttgaacttc 124
>45938_miR396:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45790_miR396:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45774_miR396:micropc
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45737_miR396:micropc
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45696_miR396:micropc
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45667_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45646_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45626_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45555_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45530_miR396:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45477_miR396:micropc
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45463_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45426_miR396:micropc
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45408_miR396:micropc
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45372_miR396:micropc
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45339_miR396:micropc
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45336_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45335_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45136_miR396:micropc
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45064_miR396:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45046_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>45040_miR396:micropc
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44996_miR396:micropc
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44995_miR396:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44986_miR396:micropc
Length = 182
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44921_miR396:micropc
Length = 182
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44875_miR396:micropc
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>44831_miR396:micropc
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
