miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44886_miR399:micropc
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 tagggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaag 60
Query: 61 gagagttgccctg 73
|||||||||||||
Sbjct: 61 gagagttgccctg 73
>45691_miR399:micropc
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 2 agggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaagg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaagg 60
Query: 62 agagttgccct 72
|||||||||||
Sbjct: 61 agagttgccct 71
>46005_miR399:micropc
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 3 gggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaagga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcttctctttgttggcaggaaatgacatgatcatctcatgaaatatcttgccaaagga 60
Query: 63 gagttgccc 71
|||||||||
Sbjct: 61 gagttgccc 69
>46805_miR399:micropc
Length = 74
Score = 60.0 bits (30), Expect = 2e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tagggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaa 59
|||||||||||||| |||||||||||| | ||||| ||| ||| | | ||||||||||
Sbjct: 1 tagggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaa 60
Query: 60 ggagagttgccctg 73
||||||||||||||
Sbjct: 61 ggagagttgccctg 74
>46373_miR399:micropc
Length = 74
Score = 60.0 bits (30), Expect = 2e-10
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 tagggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaa 59
|||||||||||||| |||||||||||| | ||||| ||| ||| | | ||||||||||
Sbjct: 1 tagggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaa 60
Query: 60 ggagagttgccctg 73
||||||||||||||
Sbjct: 61 ggagagttgccctg 74
>46622_miR399:micropc
Length = 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 2 agggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaag 60
||||||||||||| |||||||||||| | ||||| ||| ||| | | |||||||||||
Sbjct: 1 agggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaag 60
Query: 61 gagagttgccct 72
||||||||||||
Sbjct: 61 gagagttgccct 72
>46147_miR399:micropc
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 3 gggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaaagg 61
|||||||||||| |||||||||||| | ||||| ||| ||| | | ||||||||||||
Sbjct: 1 gggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaaagg 60
Query: 62 agagttgccc 71
||||||||||
Sbjct: 61 agagttgccc 70
>46506_miR399:micropc
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccctg 73
||||||||||||||||||||||
Sbjct: 87 ttgccaaaggagagttgccctg 108
>46480_miR399:micropc
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 cttgccaaaggagagttgccct 72
||||||||||||||||||||||
Sbjct: 81 cttgccaaaggagagttgccct 102
>45222_miR399:micropc
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 cttgccaaaggagagttgccct 72
||||||||||||||||||||||
Sbjct: 81 cttgccaaaggagagttgccct 102
>44965_miR399:micropc
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccctg 73
||||||||||||||||||||||
Sbjct: 87 ttgccaaaggagagttgccctg 108
>46680_miR399:micropc
Length = 96
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccct 72
|||||||||||||||||||||
Sbjct: 76 ttgccaaaggagagttgccct 96
>46063_miR399:micropc
Length = 100
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 cttgccaaaggagagttgccc 71
|||||||||||||||||||||
Sbjct: 80 cttgccaaaggagagttgccc 100
>45985_miR399:micropc
Length = 96
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccct 72
|||||||||||||||||||||
Sbjct: 76 ttgccaaaggagagttgccct 96
>46374_miR399:micropc
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgccaaaggagagttgccct 72
||||||||||||||||||||
Sbjct: 68 tgccaaaggagagttgccct 87
>46085_miR399:micropc
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccc 71
||||||||||||||||||||
Sbjct: 85 ttgccaaaggagagttgccc 104
>45225_miR399:micropc
Length = 104
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccc 71
||||||||||||||||||||
Sbjct: 85 ttgccaaaggagagttgccc 104
>45043_miR399:micropc
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 tgccaaaggagagttgccct 72
||||||||||||||||||||
Sbjct: 68 tgccaaaggagagttgccct 87
>44788_miR399:micropc
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 ttgccaaaggagagttgccc 71
||||||||||||||||||||
Sbjct: 75 ttgccaaaggagagttgccc 94
