miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45131_miR444:micropc
Length = 108
Score = 184 bits (93), Expect = 8e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 66
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 67 ttttcttgcangttgtgcagttgttgtctcaagctt 102
>45525_miR444:micropc
Length = 94
Score = 180 bits (91), Expect = 1e-46
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 2 agctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 agctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataat 35
Query: 62 tttcttgcangttgtgcagttgttgtctcaagct 95
||||||||| ||||||||||||||||||||||||
Sbjct: 34 tttcttgcaagttgtgcagttgttgtctcaagct 1
>46185_miR444:micropc
Length = 108
Score = 176 bits (89), Expect = 2e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 66
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||| ||||||||||||
Sbjct: 67 ttttcttgcaagttgtgcagttgctgtctcaagctt 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaatt 38
||||| ||| ||||||||||| | ||||||||||||||
Sbjct: 102 aagcttgagacagcaactgcacaacttgcaagaaaatt 65
>45562_miR444:micropc
Length = 96
Score = 176 bits (89), Expect = 2e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||| ||||||||||||
Sbjct: 61 ttttcttgcaagttgtgcagttgctgtctcaagctt 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaatt 38
||||| ||| ||||||||||| | ||||||||||||||
Sbjct: 96 aagcttgagacagcaactgcacaacttgcaagaaaatt 59
>45024_miR444:micropc
Length = 96
Score = 176 bits (89), Expect = 2e-45
Identities = 94/96 (97%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 96 aagctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgataa 37
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 36 ttttcttgcaagttgtgcagttgttgtctcaagctt 1
>44872_miR444:micropc
Length = 106
Score = 176 bits (89), Expect = 2e-45
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 65
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||| ||||||||||||
Sbjct: 66 ttttcttgcaagttgtgcagttgctgtctcaagctt 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaatt 38
||||| ||| ||||||||||| | ||||||||||||||
Sbjct: 101 aagcttgagacagcaactgcacaacttgcaagaaaatt 64
>45238_miR444:micropc
Length = 108
Score = 168 bits (85), Expect = 5e-43
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 7 aagctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgatca 66
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 67 ttttcttgcaagttgtgcagttgttgtctcaagctt 102
>45135_miR444:micropc
Length = 96
Score = 168 bits (85), Expect = 5e-43
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgatca 60
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 61 ttttcttgcaagttgtgcagttgttgtctcaagctt 96
>46476_miR444:micropc
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 1 aagctagaggcagcaactgcatatattgcaagaaaattgggtttcaaaccataccgataa 60
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 61 ttttcttgcaagttgtgcagttgttgtctcaagctt 96
>45734_miR444:micropc
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 1 aagctagaggcagcaactgcatatattgcaagaaaattgggtttcaaaccataccgataa 60
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 61 ttttcttgcaagttgtgcagttgttgtctcaagctt 96
>45697_miR444:micropc
Length = 96
Score = 161 bits (81), Expect = 1e-40
Identities = 92/96 (95%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaattggttttcgaaccataccgataa 60
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 1 aagctagaggcagcaactgcatatattgcaagaaaattgggtttcaaaccataccgataa 60
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| |||||||||||||||||||||||||
Sbjct: 61 ttttcttgcaagttgtgcagttgttgtctcaagctt 96
>45451_miR444:micropc
Length = 110
Score = 95.6 bits (48), Expect = 5e-21
Identities = 86/98 (87%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccgat 58
||||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 7 aagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgat 66
Query: 59 aattttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||||| |||||||||||||||||||||||||
Sbjct: 67 gattttcttgcaagttgtgcagttgttgtctcaagctt 104
>45175_miR444:micropc
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 86/98 (87%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccgat 58
||||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 98 aagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgat 39
Query: 59 aattttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||||| |||||||||||||||||||||||||
Sbjct: 38 gattttcttgcaagttgtgcagttgttgtctcaagctt 1
>45168_miR444:micropc
Length = 110
Score = 95.6 bits (48), Expect = 5e-21
Identities = 86/98 (87%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa--ttggttttcgaaccataccgat 58
||||||||||||||||||||||| |||||||||||| | |||||| | |||||||
Sbjct: 7 aagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccgat 66
Query: 59 aattttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||||| |||||||||||||||||||||||||
Sbjct: 67 gattttcttgcaagttgtgcagttgttgtctcaagctt 104
>46210_miR444:micropc
Length = 102
Score = 87.7 bits (44), Expect = 1e-18
Identities = 81/94 (86%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 9 ggcagcaactgcatatcttgcaagaaaatt------ggttttcgaaccataccgataatt 62
||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||
Sbjct: 9 ggcagcaactgcacatcttgcaagaaaatctttagggtttttcagaccataccgatgatt 68
Query: 63 ttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||| |||||||||||||||||||||||||
Sbjct: 69 ttcttgcaagttgtgcagttgttgtctcaagctt 102
>45828_miR444:micropc
Length = 114
Score = 87.7 bits (44), Expect = 1e-18
Identities = 81/94 (86%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 9 ggcagcaactgcatatcttgcaagaaaatt------ggttttcgaaccataccgataatt 62
||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||
Sbjct: 15 ggcagcaactgcacatcttgcaagaaaatctttagggtttttcagaccataccgatgatt 74
Query: 63 ttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||| |||||||||||||||||||||||||
Sbjct: 75 ttcttgcaagttgtgcagttgttgtctcaagctt 108
>45742_miR444:micropc
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| ||||||||||||||| |||||||||
Sbjct: 68 ttttcttgcaagttgtgcagttgttgcctcaagctt 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa 36
||||| |||||| |||||||| | ||||||||||||
Sbjct: 103 aagcttgaggcaacaactgcacaacttgcaagaaaa 68
>45712_miR444:micropc
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 61 ttttcttgcangttgtgcagttgttgtctcaagctt 96
|||||||||| ||||||||||||||| |||||||||
Sbjct: 68 ttttcttgcaagttgtgcagttgttgcctcaagctt 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaaa 36
||||| |||||| |||||||| | ||||||||||||
Sbjct: 103 aagcttgaggcaacaactgcacaacttgcaagaaaa 68
>46669_miR444:micropc
Length = 136
Score = 56.0 bits (28), Expect = 5e-09
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| ||||||||||||||| |||||||||
Sbjct: 102 tttcttgcaagttgtgcagttgttgcctcaagctt 136
>46544_miR444:micropc
Length = 136
Score = 56.0 bits (28), Expect = 5e-09
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| ||||||||||||||| |||||||||
Sbjct: 102 tttcttgcaagttgtgcagttgttgcctcaagctt 136
>46412_miR444:micropc
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| |||||||||||| ||||||||||||
Sbjct: 35 tttcttgcaagttgtgcagttgctgtctcaagctt 1
>45976_miR444:micropc
Length = 133
Score = 56.0 bits (28), Expect = 5e-09
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| ||||||||||||||| |||||||||
Sbjct: 99 tttcttgcaagttgtgcagttgttgcctcaagctt 133
>46299_miR444:micropc
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||| ||| |||||||||||| ||||||||||||
Sbjct: 69 tttctcgcaagttgtgcagttgctgtctcaagctt 103
>45960_miR444:micropc
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||| ||| |||||||||||| ||||||||||||
Sbjct: 69 tttctcgcaagttgtgcagttgctgtctcaagctt 103
>45665_miR444:micropc
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| |||||||||||| || |||||||||
Sbjct: 72 tttcttgcaagttgtgcagttgctgcctcaagctt 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaa 35
||||| ||||||||||||||| | |||||||||||
Sbjct: 106 aagcttgaggcagcaactgcacaacttgcaagaaa 72
>45334_miR444:micropc
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttcttgcangttgtgcagttgttgtctcaagctt 96
||||||||| |||||||||||| || |||||||||
Sbjct: 67 tttcttgcaagttgtgcagttgctgcctcaagctt 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaa 35
||||| ||||||||||||||| | |||||||||||
Sbjct: 101 aagcttgaggcagcaactgcacaacttgcaagaaa 67
>46094_miR444:micropc
Length = 151
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaa 35
||||| |||||||||||||||| |||||||||||
Sbjct: 146 aagcttgaggcagcaactgcatgacttgcaagaaa 112
>45904_miR444:micropc
Length = 141
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 aagctagaggcagcaactgcatatcttgcaagaaa 35
||||| |||||||||||||||| |||||||||||
Sbjct: 141 aagcttgaggcagcaactgcatgacttgcaagaaa 107
