miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45619_miR156:micropc
Length = 84
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagaaagagagcacaagccgggattagcaaatataaagttttgcccttgtcggg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgacagaagaaagagagcacaagccgggattagcaaatataaagttttgcccttgtcggg 60
Query: 62 agtgtgctctctttacttctgtca 85
||||||||||||||||||||||||
Sbjct: 61 agtgtgctctctttacttctgtca 84
>45727_miR156:micropc
Length = 78
Score = 155 bits (78), Expect = 6e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 5 cagaagaaagagagcacaagccgggattagcaaatataaagttttgcccttgtcgggagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagaaagagagcacaagccgggattagcaaatataaagttttgcccttgtcgggagt 60
Query: 65 gtgctctctttacttctg 82
||||||||||||||||||
Sbjct: 61 gtgctctctttacttctg 78
>46205_miR157:micropc
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttgacagaagaaagagagcacaa 23
|||||||||||||||||||||||
Sbjct: 1 ttgacagaagaaagagagcacaa 23
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 59 gggagtgtgctctctttacttctgtca 85
||||||||||||||| | |||||||||
Sbjct: 58 gggagtgtgctctctcttcttctgtca 84
>45433_miR156:micropc
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgacagaagaaagagagcacaa 23
||||||||||||||||||||||
Sbjct: 1 tgacagaagaaagagagcacaa 22
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 59 gggagtgtgctctctttacttctgtca 85
||||||||||||||| | |||||||||
Sbjct: 57 gggagtgtgctctctcttcttctgtca 83
>46600_miR156:micropc
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 gacagaagaaagagagcacaagccggga 30
||||||||| ||||||||||| ||||||
Sbjct: 1 gacagaagagagagagcacaacccggga 28
>46380_miR157:micropc
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 ttgacagaagaaagagagcacaa 23
||||||||||| |||||||||||
Sbjct: 1 ttgacagaagagagagagcacaa 23
>45453_miR156:micropc
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5 cagaagaaagagagcacaa 23
|||||||||||||||||||
Sbjct: 1 cagaagaaagagagcacaa 19
