miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46684_miR171:micropc
Length = 79
Score = 157 bits (79), Expect = 1e-39
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatgatatgttttagccaagtacttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tattggcgtgcctcaatctaattacatggttaaatgatatgttttagccaagtacttttg 60
Query: 61 attgagccgcgtcaatatc 79
|||||||||||||||||||
Sbjct: 61 attgagccgcgtcaatatc 79
>45662_miR171:micropc
Length = 78
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatgatatgttttagccaagtacttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tattggcgtgcctcaatctaattacatggttaaatgatatgttttagccaagtacttttg 60
Query: 61 attgagccgcgtcaatat 78
||||||||||||||||||
Sbjct: 61 attgagccgcgtcaatat 78
>46553_miR171:micropc
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgcgtcaatatc 79
|||||||||||||||||||||||
Sbjct: 59 tttgattgagccgcgtcaatatc 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatga 37
||||||||||||||||| ||| ||||||||| ||||
Sbjct: 3 tattggcgtgcctcaatttaaagacatggttagatga 39
>46163_miR171:micropc
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgcgtcaatatc 79
|||||||||||||||||||||||
Sbjct: 60 tttgattgagccgcgtcaatatc 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatga 37
||||||||||||||||| ||| ||||||||| ||||
Sbjct: 4 tattggcgtgcctcaatttaaagacatggttagatga 40
>45160_miR171:micropc
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgcgtcaatatc 79
|||||||||||||||||||||||
Sbjct: 59 tttgattgagccgcgtcaatatc 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatga 37
||||||||||||||||| ||| ||||||||| ||||
Sbjct: 3 tattggcgtgcctcaatttaaagacatggttagatga 39
>45337_miR171:micropc
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tttgattgagccgcgtcaatat 78
||||||||||||||||||||||
Sbjct: 58 tttgattgagccgcgtcaatat 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 tattggcgtgcctcaatctaattacatggttaaatga 37
||||||||||||||||| ||| ||||||||| ||||
Sbjct: 2 tattggcgtgcctcaatttaaagacatggttagatga 38
>45177_miR171:micropc
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 46 agccaagtacttttgattgagccgcgtcaatatc 79
||||| ||| |||| |||||||||||||||||||
Sbjct: 46 agccatgtaattttaattgagccgcgtcaatatc 79
>46257_miR171:micropc
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgcgtcaatatc 79
|||||||||||||||||||||
Sbjct: 63 tgattgagccgcgtcaatatc 83
>45171_miR171:micropc
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgcgtcaatatc 79
|||||||||||||||||||||
Sbjct: 63 tgattgagccgcgtcaatatc 83
>44859_miR171:micropc
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgcgtcaatatc 79
|||||||||||||||||||||
Sbjct: 63 tgattgagccgcgtcaatatc 83
>46593_miR171:micropc
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 ttttgattgagccgcgtcaatatc 79
|||| |||||||||||||||||||
Sbjct: 57 ttttcattgagccgcgtcaatatc 80
>46581_miR171:micropc
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tgattgagccgcgtcaatat 78
||||||||||||||||||||
Sbjct: 62 tgattgagccgcgtcaatat 81
>45523_miR171:micropc
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 ttttgattgagccgcgtcaatatc 79
|||| |||||||||||||||||||
Sbjct: 58 ttttcattgagccgcgtcaatatc 81
>45488_miR171:micropc
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 gattgagccgcgtcaatatc 79
||||||||||||||||||||
Sbjct: 81 gattgagccgcgtcaatatc 100
>44972_miR171:micropc
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 gattgagccgcgtcaatatc 79
||||||||||||||||||||
Sbjct: 82 gattgagccgcgtcaatatc 101
>44829_miR171:micropc
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 gattgagccgcgtcaatatc 79
||||||||||||||||||||
Sbjct: 81 gattgagccgcgtcaatatc 100
>45955_miR171:micropc
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60 gattgagccgcgtcaatat 78
|||||||||||||||||||
Sbjct: 80 gattgagccgcgtcaatat 98
>44828_miR171:micropc
Length = 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 ttttgattgagccgcgtcaatat 78
|||| ||||||||||||||||||
Sbjct: 56 ttttcattgagccgcgtcaatat 78
