miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46205_miR157:micropc
Length = 84
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttggga 61
Query: 61 gtgtgctctctcttcttctgtca 83
|||||||||||||||||||||||
Sbjct: 62 gtgtgctctctcttcttctgtca 84
>45453_miR156:micropc
Length = 77
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 4 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 60
Query: 64 tgctctctcttcttctg 80
|||||||||||||||||
Sbjct: 61 tgctctctcttcttctg 77
>46600_miR156:micropc
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 2 gacagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggag 61
||||||||| ||||||||||||||| | |||| |||| |||| ||| |||||||||
Sbjct: 1 gacagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggag 60
Query: 62 tgtgctctctcttcttctgtc 82
||||| |||||||| ||||||
Sbjct: 61 tgtgccctctcttcctctgtc 81
>45755_miR156:micropc
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 4 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 63
||||||| ||||||||||||||| | |||| |||| |||| ||| |||||||||||
Sbjct: 1 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 60
Query: 64 tgctctctcttcttctg 80
||| |||||||| ||||
Sbjct: 61 tgccctctcttcctctg 77
>46380_miR157:micropc
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 tgttgggagtgtgctctctcttcttctgtca 83
||||||||||||||||||| ||||||||||
Sbjct: 55 tgttgggagtgtgctctctactcttctgtca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaacccg 26
|||||||||| |||||||||||||||
Sbjct: 2 tgacagaagagagagagcacaacccg 27
>45257_miR156:micropc
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 tgttgggagtgtgctctctcttcttctgtca 83
||||||||||||||||||| ||||||||||
Sbjct: 54 tgttgggagtgtgctctctactcttctgtca 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaacccg 26
|||||||||| |||||||||||||||
Sbjct: 1 tgacagaagagagagagcacaacccg 26
>44952_miR156:micropc
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 tgttgggagtgtgctctctcttcttctgtca 83
||||||||||||||||||| ||||||||||
Sbjct: 54 tgttgggagtgtgctctctactcttctgtca 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaacccg 26
|||||||||| |||||||||||||||
Sbjct: 1 tgacagaagagagagagcacaacccg 26
>46790_miR156:micropc
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 tgttgggagtgtgctctctcttcttctgtc 82
||||||||||||||||||| |||||||||
Sbjct: 53 tgttgggagtgtgctctctactcttctgtc 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 gacagaagaaagagagcacaacccg 26
||||||||| |||||||||||||||
Sbjct: 1 gacagaagagagagagcacaacccg 25
>45619_miR156:micropc
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaa 22
||||||||||||||||||||||
Sbjct: 1 tgacagaagaaagagagcacaa 22
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 57 gggagtgtgctctctcttcttctgtca 83
||||||||||||||| | |||||||||
Sbjct: 58 gggagtgtgctctctttacttctgtca 84
>45310_miR157:micropc
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagaaagagagcacaa 22
||||||||||||||||||||||
Sbjct: 2 tgacagaagaaagagagcacaa 23
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 57 gggagtgtgctctctcttcttctgtca 83
||||||||||||||| | |||||||||
Sbjct: 59 gggagtgtgctctctttacttctgtca 85
>45156_miR156:micropc
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 tgttgggagtgtgctctctcttcttctg 80
||||||||||||||||||| |||||||
Sbjct: 51 tgttgggagtgtgctctctactcttctg 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 cagaagaaagagagcacaacccg 26
||||||| |||||||||||||||
Sbjct: 1 cagaagagagagagcacaacccg 23
>45727_miR156:micropc
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4 cagaagaaagagagcacaa 22
|||||||||||||||||||
Sbjct: 1 cagaagaaagagagcacaa 19
