miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46205_miR157:micropc
Length = 84
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 64
Query: 61 tgctctctcttcttctg 77
|||||||||||||||||
Sbjct: 65 tgctctctcttcttctg 81
>45433_miR156:micropc
Length = 83
Score = 153 bits (77), Expect = 2e-38
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 63
Query: 61 tgctctctcttcttctg 77
|||||||||||||||||
Sbjct: 64 tgctctctcttcttctg 80
>46600_miR156:micropc
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 60
||||||| ||||||||||||||| | |||| |||| |||| ||| |||||||||||
Sbjct: 3 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 62
Query: 61 tgctctctcttcttctg 77
||| |||||||| ||||
Sbjct: 63 tgccctctcttcctctg 79
>45755_miR156:micropc
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccgccattggccaaagagatcttcgccactgttgggagtg 60
||||||| ||||||||||||||| | |||| |||| |||| ||| |||||||||||
Sbjct: 1 cagaagagagagagcacaacccgggaatggctaaaggagtctttgcctttgttgggagtg 60
Query: 61 tgctctctcttcttctg 77
||| |||||||| ||||
Sbjct: 61 tgccctctcttcctctg 77
>46790_miR156:micropc
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tgttgggagtgtgctctctcttcttctg 77
||||||||||||||||||| |||||||
Sbjct: 53 tgttgggagtgtgctctctactcttctg 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccg 23
||||||| |||||||||||||||
Sbjct: 3 cagaagagagagagcacaacccg 25
>46380_miR157:micropc
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tgttgggagtgtgctctctcttcttctg 77
||||||||||||||||||| |||||||
Sbjct: 55 tgttgggagtgtgctctctactcttctg 82
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccg 23
||||||| |||||||||||||||
Sbjct: 5 cagaagagagagagcacaacccg 27
>45257_miR156:micropc
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tgttgggagtgtgctctctcttcttctg 77
||||||||||||||||||| |||||||
Sbjct: 54 tgttgggagtgtgctctctactcttctg 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccg 23
||||||| |||||||||||||||
Sbjct: 4 cagaagagagagagcacaacccg 26
>45156_miR156:micropc
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tgttgggagtgtgctctctcttcttctg 77
||||||||||||||||||| |||||||
Sbjct: 51 tgttgggagtgtgctctctactcttctg 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccg 23
||||||| |||||||||||||||
Sbjct: 1 cagaagagagagagcacaacccg 23
>44952_miR156:micropc
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 50 tgttgggagtgtgctctctcttcttctg 77
||||||||||||||||||| |||||||
Sbjct: 54 tgttgggagtgtgctctctactcttctg 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaacccg 23
||||||| |||||||||||||||
Sbjct: 4 cagaagagagagagcacaacccg 26
>45727_miR156:micropc
Length = 78
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaa 19
|||||||||||||||||||
Sbjct: 1 cagaagaaagagagcacaa 19
>45619_miR156:micropc
Length = 84
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaa 19
|||||||||||||||||||
Sbjct: 4 cagaagaaagagagcacaa 22
>45310_miR157:micropc
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 cagaagaaagagagcacaa 19
|||||||||||||||||||
Sbjct: 5 cagaagaaagagagcacaa 23
