miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46464_miR1132:micropc
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tttctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatg 60
Query: 61 aatctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgcta 120
Query: 121 gaaaatcctacattatgaaacggagggag 149
|||||||||||||||||||||||||||||
Sbjct: 121 gaaaatcctacattatgaaacggagggag 149
Score = 75.8 bits (38), Expect = 8e-15
Identities = 116/142 (81%)
Strand = Plus / Minus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||||| |||||| | ||||||||| | | |||||| ||||||| |||||||||
Sbjct: 145 ctccgtttcataatgtaggattttctagcactacccatatttatatagaagttaatgaat 86
Query: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaa 123
||| || |||||| || |||||||||||| ||||||| |||||| | | ||||||||
Sbjct: 85 ctaaacacatatatatgcctagattcattaatatctatatgaatatgtgcaatgctagaa 26
Query: 124 aatcctacattatgaaacggag 145
| | |||||| ||||||||||
Sbjct: 25 agtattacattgtgaaacggag 4
>45099_miR1132:micropc
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tttctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatg 60
Query: 61 aatctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgcta 120
Query: 121 gaaaatcctacattatgaaacggagggag 149
|||||||||||||||||||||||||||||
Sbjct: 121 gaaaatcctacattatgaaacggagggag 149
Score = 75.8 bits (38), Expect = 8e-15
Identities = 116/142 (81%)
Strand = Plus / Minus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||||| |||||| | ||||||||| | | |||||| ||||||| |||||||||
Sbjct: 145 ctccgtttcataatgtaggattttctagcactacccatatttatatagaagttaatgaat 86
Query: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaa 123
||| || |||||| || |||||||||||| ||||||| |||||| | | ||||||||
Sbjct: 85 ctaaacacatatatatgcctagattcattaatatctatatgaatatgtgcaatgctagaa 26
Query: 124 aatcctacattatgaaacggag 145
| | |||||| ||||||||||
Sbjct: 25 agtattacattgtgaaacggag 4
>44978_miR1130:micropc
Length = 144
Score = 101 bits (51), Expect = 1e-22
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 8 gtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaatctag 67
|||||| ||||||| ||||||||||||| | ||||||||||||| | ||| ||||||
Sbjct: 139 gtttcataatgtaagactttctagcattacctgtattcatatagatgtcaataaatctaa 80
Query: 68 gcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaaaatc 127
||||||| |||| |||||||||||| | | ||||||||| ||| | ||||||||| ||
Sbjct: 79 acatatatgtgtgcttagattcattagcatatatataaatgtggacaatgctagaaagtc 20
Query: 128 ctacattatgaaacggagg 146
||||||||||||||||||
Sbjct: 19 ttacattatgaaacggagg 1
Score = 101 bits (51), Expect = 1e-22
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||||| ||||||| |||||||||||||| || ||| ||||| || ||||||||
Sbjct: 2 ctccgtttcataatgtaagactttctagcattgtccacatttatatatatgctaatgaat 61
Query: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaa 123
||| ||| | |||| |||||||||| ||| || ||||||| |||| |||| ||||||||
Sbjct: 62 ctaagcacacatatatgtttagatttattgacatctatatgaatacaggtaatgctagaa 121
Query: 124 aatcctacattatgaaacggagg 146
| || ||||||||||||| ||||
Sbjct: 122 agtcttacattatgaaacagagg 144
>45215_miR1120:micropc
Length = 142
Score = 99.6 bits (50), Expect = 6e-22
Identities = 119/142 (83%)
Strand = Plus / Plus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||| | ||||||| ||||||||||||||| || ||||| || || |||||||||
Sbjct: 1 ctccgttttataatgtaaaactttctagcattgcccacgttcatttatatgttaatgaat 60
Query: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaa 123
|||| |||| |||||||||| |||||||||| ||||||| ||||| | | || |||||
Sbjct: 61 ctagatatatttatgtgtttaaattcattaacatctatatgtatatgagcaatgttagaa 120
Query: 124 aatcctacattatgaaacggag 145
| || || ||||||||||||||
Sbjct: 121 attcttatattatgaaacggag 142
Score = 60.0 bits (30), Expect = 5e-10
Identities = 114/142 (80%)
Strand = Plus / Minus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||||| ||| ||| | |||||| |||||| ||||| ||||||||| |||||||||
Sbjct: 142 ctccgtttcataatataagaatttctaacattgctcatatacatatagatgttaatgaat 83
Query: 64 ctaggcatatatatgtgtttagattcattaacttctatataaatatgggtagtgctagaa 123
|| || ||| || | | ||||||||||||| | || || || |||| | ||||||||
Sbjct: 82 ttaaacacataaatatatctagattcattaacatataaatgaacgtgggcaatgctagaa 23
Query: 124 aatcctacattatgaaacggag 145
| | |||||||| ||||||||
Sbjct: 22 agttttacattataaaacggag 1
>45260_miR819:micropc
Length = 116
Score = 75.8 bits (38), Expect = 8e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||
Sbjct: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtc 65
Query: 83 tagattcattaacttctatataaatatgg 111
|| |||||||||| |||||||||||||||
Sbjct: 66 tatattcattaacatctatataaatatgg 94
Score = 71.9 bits (36), Expect = 1e-13
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
||||||||| || | |||||| |||||||| ||||||||| ||| || |||||||| |
Sbjct: 109 actttctagtatngtccatatttatatagatgttaatgaatatagacacatatatgt--t 52
Query: 83 tagattcattaacttctatataaatatgggtagtgctagaaa 124
||||||||||||| | ||||| ||||||| || |||||||||
Sbjct: 51 tagattcattaacatatatatgaatatggataatgctagaaa 10
>45075_miR819:micropc
Length = 116
Score = 75.8 bits (38), Expect = 8e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
||||||||||||| |||||||||||| || |||||||||||| ||||||| ||||
Sbjct: 8 actttctagcattatccatattcatatatatgttaatgaatctaaacatatat--gtgtc 65
Query: 83 tagattcattaacttctatataaatatgg 111
|| |||||||||| |||||||||||||||
Sbjct: 66 tatattcattaacatctatataaatatgg 94
Score = 71.9 bits (36), Expect = 1e-13
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Minus
Query: 23 actttctagcattgcacatattcatatagatattaatgaatctaggcatatatatgtgtt 82
||||||||| || | |||||| |||||||| ||||||||| ||| || |||||||| |
Sbjct: 109 actttctagtatngtccatatttatatagatgttaatgaatatagacacatatatgt--t 52
Query: 83 tagattcattaacttctatataaatatgggtagtgctagaaa 124
||||||||||||| | ||||| ||||||| || |||||||||
Sbjct: 51 tagattcattaacatatatatgaatatggataatgctagaaa 10
>46437_miR1436:micropc
Length = 108
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 4 ctccgtttcacaatgtaatactttctagcattgcacatattcatatagatattaatgaat 63
|||||||||| ||||||| | ||||||||||||| || || |||||||||||||||||||
Sbjct: 103 ctccgtttcataatgtaagattttctagcattgcccacatacatatagatattaatgaat 44
Score = 63.9 bits (32), Expect = 3e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 86 attcattaacttctatataaatatgggtagtgctagaaaatcctacattatgaaacggag 145
||||||||| ||||||| || |||| | |||||||||||| |||||||||||||||||
Sbjct: 44 attcattaatatctatatgtatgtgggcaatgctagaaaatcttacattatgaaacggag 103
Query: 146 ggag 149
||||
Sbjct: 104 ggag 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 9 tttcacaatgtaatactttctagcattgcacatattcat 47
||||||||||||| ||||||||||||||| |||||||||
Sbjct: 11 tttcacaatgtaagactttctagcattgctcatattcat 49
>45731_miR446:micropc
Length = 86
Score = 69.9 bits (35), Expect = 5e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 42 attcatatagatattaatgaatctaggcatatatatgtgtttagattcattaacttctat 101
|||||||||||| |||||||||||| ||||||| ||||| ||||||||||||| || ||
Sbjct: 11 attcatatagattttaatgaatctaaacatatatgtgtgtctagattcattaacatcaat 70
Query: 102 ataaatatggg 112
|| ||| ||||
Sbjct: 71 atgaatgtggg 81
Score = 63.9 bits (32), Expect = 3e-11
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 32 cattgcacatattcatatagatattaatgaatctaggcatatatatgtgtttagattcat 91
|||||| || |||||||| ||| ||||||||||||| || | |||| |||||||||||||
Sbjct: 86 cattgcccacattcatattgatgttaatgaatctagacacacatatatgtttagattcat 27
Query: 92 taacttctatat 103
||| |||||||
Sbjct: 26 taaaatctatat 15
>45708_miR809:micropc
Length = 100
Score = 65.9 bits (33), Expect = 8e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 39 catattcatatagatattaatgaatctaggcatatatatgtgtttagattcattaacttc 98
||||||||||| ||||||||||||||||| | |||||| ||| ||||||||||| | ||
Sbjct: 15 catattcatattgatattaatgaatctagatagatatatatgtctagattcattagcatc 74
Query: 99 tatataaat 107
||||||||
Sbjct: 75 aatataaat 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 56 taatgaatctaggcatatatatgtgtttagattcattaa 94
|||||||||||| ||||||||| | | ||||||||||||
Sbjct: 69 taatgaatctagacatatatatctatctagattcattaa 31
>46801_miR809:micropc
Length = 110
Score = 60.0 bits (30), Expect = 5e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 42 attcatatagatattaatgaatctaggcatatatatgtgtttagattcattaacttctat 101
|||||||| || ||||||||||||| | |||||| ||||||||||||||||| || ||
Sbjct: 18 attcatattaatgttaatgaatctagatagatatatatgtttagattcattaacatcaat 77
Query: 102 ataaat 107
||||||
Sbjct: 78 ataaat 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 46 atatagatattaatgaatctaggcatatatatgtgtttagattcattaac 95
|||| ||| |||||||||||| ||||||||| | | |||||||||||||
Sbjct: 79 atattgatgttaatgaatctaaacatatatatctatctagattcattaac 30
>46637_miR446:micropc
Length = 80
Score = 58.0 bits (29), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 39 catattcatatagatattaatgaatctaggcatatatatgtgtttagattcattaac 95
||||||||||| ||| ||||||||||||| | |||||| ||| |||||||||||||
Sbjct: 75 catattcatattgatgttaatgaatctagctagatatatatgtctagattcattaac 19
Score = 52.0 bits (26), Expect = 1e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 55 ttaatgaatctaggcatatatatgtgtttagattcattaacttctatataaatatggg 112
||||||||||||| ||||||||| | ||||||||||||| || |||| ||||||||
Sbjct: 20 ttaatgaatctagacatatatatctagctagattcattaacatcaatatgaatatggg 77
>46318_miR446:micropc
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 40 atattcatatagatattaatgaatctaggcatatatatgtgtttagattcattaacttct 99
|||||||||| || ||||| ||||||| ||||||||| | | ||||||||||||| ||
Sbjct: 78 atattcatattgacgttaataaatctagacatatatatctatatagattcattaacatca 19
Query: 100 atataaatatggg 112
||||||||||||
Sbjct: 18 ttataaatatggg 6
>45687_miR819:micropc
Length = 84
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 23 actttctagcattgcacatattcatatagatattaatgaat 63
||||||||||||||| || ||||||||| || |||||||||
Sbjct: 72 actttctagcattgcccacattcatatatatgttaatgaat 32
