miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45582_miR156:micropc
Length = 89
Score = 135 bits (68), Expect = 6e-33
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 135 bits (68), Expect = 6e-33
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45062_miR156:micropc
Length = 91
Score = 135 bits (68), Expect = 6e-33
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>45047_miR156:micropc
Length = 91
Score = 135 bits (68), Expect = 6e-33
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>44842_miR156:micropc
Length = 91
Score = 135 bits (68), Expect = 6e-33
Identities = 82/89 (92%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>45810_miR156:micropc
Length = 91
Score = 127 bits (64), Expect = 1e-30
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 62 ttatgcgtgtgcccacttctcttgctgtc 90
>45659_miR156:micropc
Length = 89
Score = 127 bits (64), Expect = 1e-30
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgcccacttctcttgctgtc 89
>46803_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>46709_miR156:micropc
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>46069_miR156:micropc
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>45385_miR156:micropc
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>45182_miR156:micropc
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>46842_miR156:micropc
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctctt 83
||||||||||||||||||||||||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>46146_miR156:micropc
Length = 84
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctctt 83
||||||||||||||||||||||||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>46798_miR156:micropc
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 75/89 (84%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||| ||||||||| |||||| |||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaa-caattgtatagagagg-tatacacttgt---aa 56
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
||||||||||||||||||||||||||||
Sbjct: 57 atatgcgtgtgctcacttctcttgctgtc 85
>45125_miR156:micropc
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 75/89 (84%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatnnnnnnnctatacatttgttggaa 60
|||||||||||||||||||||||||| ||||||||| |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaa-caattgtatagagagg-tatacacttgt---aa 55
Query: 61 ttatgcgtgtgctcacttctcttgctgtc 89
||||||||||||||||||||||||||||
Sbjct: 56 atatgcgtgtgctcacttctcttgctgtc 84
>46175_miR156:micropc
Length = 92
Score = 56.0 bits (28), Expect = 4e-09
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtat 36
||||||||||||||||||||||| ||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgc-aagcaattgtat 36
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 atgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||
Sbjct: 65 atgcgtgtgctcacttctcttgctgtc 91
>45587_miR156:micropc
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtat 36
||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgc-aagcaattgtat 35
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 atgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||||||||||
Sbjct: 64 atgcgtgtgctcacttctcttgctgtc 90
>44793_miR156:micropc
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgctcacttctctt 83
||||| || |||||||||||||||||||||||
Sbjct: 51 ttgtttgagttatgcgtgtgctcacttctctt 82
>46707_miR156:micropc
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 tgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||| |||||
Sbjct: 65 tgcgtgtgctcacttctctttctgtc 90
>46153_miR156:micropc
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 tgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||| |||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
>45524_miR156:micropc
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 64 tgcgtgtgctcacttctcttgctgtc 89
|||||||||||||||||||| |||||
Sbjct: 66 tgcgtgtgctcacttctctttctgtc 91
>46066_miR156:micropc
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 tgcgtgtgctcacttctctt 83
||||||||||||||||||||
Sbjct: 63 tgcgtgtgctcacttctctt 82
