miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45949_miR408:micropc
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gcaggaaagaggcagagcatggatggagctatcaacaaaataaattgagaatgggagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaggaaagaggcagagcatggatggagctatcaacaaaataaattgagaatgggagatg 60
Query: 61 tttgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgttgtggctctactcatgcactgcctcttccctggc 99
>46728_miR408:micropc
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
>46159_miR408:micropc
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
>45531_miR408:micropc
Length = 89
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||||||||||||||
Sbjct: 52 tgttgtggctctactcatgcactgcctcttccctggc 88
>45860_miR408:micropc
Length = 87
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
||||||||||| |||||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
>45398_miR408:micropc
Length = 89
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
||||||||||| |||||||||||||||||||||||||
Sbjct: 52 tgttgtggctccactcatgcactgcctcttccctggc 88
>45090_miR408:micropc
Length = 87
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
||||||||||| |||||||||||||||||||||||||
Sbjct: 51 tgttgtggctccactcatgcactgcctcttccctggc 87
>46505_miR408:micropc
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 62 ttgttgtggctctactcatgcactgcctcttccctggc 99
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 46 ttgttttggctctacccatgcactgcctcttccctggc 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 11 aggcagagcatggatggagcta 32
>46052_miR408:micropc
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 62 ttgttgtggctctactcatgcactgcctcttccctggc 99
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 46 ttgttttggctctacccatgcactgcctcttccctggc 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 11 aggcagagcatggatggagcta 32
>45593_miR408:micropc
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 62 ttgttgtggctctactcatgcactgcctcttccctggc 99
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 47 ttgttttggctctacccatgcactgcctcttccctggc 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 12 aggcagagcatggatggagcta 33
>46401_miR408:micropc
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 11 aggcagagcatggatggagcta 32
>45814_miR408:micropc
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 48 tgttttggctctacccatgcactgcctcttccctggc 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 12 aggcagagcatggatggagcta 33
>45726_miR408:micropc
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 47 tgttttggctctacccatgcactgcctcttccctggc 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagcta 31
||||||||||||||||||||||
Sbjct: 11 aggcagagcatggatggagcta 32
>46359_miR408:micropc
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 actcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||
Sbjct: 60 actcatgcactgcctcttccctggc 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagctatcaaca 37
|||||||||||||||| |||||| ||||
Sbjct: 11 aggcagagcatggatgcagctattaaca 38
>46309_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 actcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||
Sbjct: 59 actcatgcactgcctcttccctggc 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagctatcaaca 37
|||||||||||||||| |||||| ||||
Sbjct: 10 aggcagagcatggatgcagctattaaca 37
>46155_miR408:micropc
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 75 actcatgcactgcctcttccctggc 99
|||||||||||||||||||||||||
Sbjct: 59 actcatgcactgcctcttccctggc 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 aggcagagcatggatggagctatcaaca 37
|||||||||||||||| |||||| ||||
Sbjct: 10 aggcagagcatggatgcagctattaaca 37
>45394_miR408:micropc
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||| ||||||||||||||||||||||||
Sbjct: 75 tgttgtggctacgctcatgcactgcctcttccctggc 111
>44968_miR408:micropc
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||| ||||||||||||||||||||||||
Sbjct: 74 tgttgtggctacgctcatgcactgcctcttccctggc 110
>44861_miR408:micropc
Length = 121
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||| ||||||||||||||||||||||||
Sbjct: 84 tgttgtggctacgctcatgcactgcctcttccctggc 120
>44821_miR408:micropc
Length = 119
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 63 tgttgtggctctactcatgcactgcctcttccctggc 99
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 tgttgtggctacgctcatgcactgcctcttccctggc 119
