miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46378_miR169:micropc
Length = 127
Score = 151 bits (76), Expect = 1e-37
Identities = 110/127 (86%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagcttnnnnn 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagctttctct 60
Query: 61 nnnnnnnnnnnngtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctctctctctgtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtc 120
Query: 121 tttggct 127
|||||||
Sbjct: 121 tttggct 127
>46837_miR169:micropc
Length = 126
Score = 149 bits (75), Expect = 6e-37
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagcttnnnnnn 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagctttctctc 60
Query: 62 nnnnnnnnnnngtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 121
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctctctctctgtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 120
Query: 122 ttggct 127
||||||
Sbjct: 121 ttggct 126
>46631_miR169:micropc
Length = 126
Score = 149 bits (75), Expect = 6e-37
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagcttnnnnnn 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagctttctctc 60
Query: 62 nnnnnnnnnnngtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 121
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctctctctctgtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 120
Query: 122 ttggct 127
||||||
Sbjct: 121 ttggct 126
>45539_miR169:micropc
Length = 126
Score = 149 bits (75), Expect = 6e-37
Identities = 109/126 (86%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagcttnnnnnn 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgactgttttgccgagcgcggaaataaaatgcagctttctctc 60
Query: 62 nnnnnnnnnnngtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 121
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctctctctctgtatatttgccgccgtacgtatttatacgaactcctcggcaagttgtct 120
Query: 122 ttggct 127
||||||
Sbjct: 121 ttggct 126
>45957_miR169:micropc
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgact 23
|||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgact 23
>44851_miR169:micropc
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgact 23
|||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgact 23
>46573_miR169:micropc
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgact 23
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgact 22
>46292_miR169:micropc
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgact 23
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgact 22
>46208_miR169:micropc
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgac 22
>45092_miR169:micropc
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgact 23
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgact 22
>44868_miR169:micropc
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgac 22
||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgac 22
>45932_miR169:micropc
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccga 21
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>45625_miR169:micropc
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgac 22
|||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgac 21
>45442_miR169:micropc
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgac 22
|||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgac 21
>46714_miR169:micropc
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>46708_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>46695_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>46532_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>46455_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>46330_miR169:micropc
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>46294_miR169:micropc
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>46223_miR169:micropc
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>46177_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>46022_miR169:micropc
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45963_miR169:micropc
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45912_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>45791_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>45747_miR169:micropc
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45359_miR169:micropc
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45348_miR169:micropc
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45343_miR169:micropc
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45254_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>45191_miR169:micropc
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 92 cagccaaggatgacttgccg 73
>45170_miR169:micropc
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>45101_miR169:micropc
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccga 21
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccga 20
>45027_miR169:micropc
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>44882_miR169:micropc
Length = 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>44852_miR169:micropc
Length = 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccg 20
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
