miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45412_miR398:micropc
Length = 143
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 121 tttgtgttctcaggtcacccct 142
>45917_miR398:micropc
Length = 140
Score = 244 bits (123), Expect = 1e-65
Identities = 138/142 (97%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacactaagaacacacatggttgaattgctatctccactgcatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtct--accatcca 118
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 119 tttgtgttctcaggtcacccct 140
>45213_miR398:micropc
Length = 141
Score = 244 bits (123), Expect = 1e-65
Identities = 138/142 (97%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgacactaagaacacacatggttgaattgctatctccactgcatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtct--accatcca 118
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 119 tttgtgttctcaggtcacccct 140
>46357_miR398:micropc
Length = 139
Score = 204 bits (103), Expect = 1e-53
Identities = 134/142 (94%), Gaps = 3/142 (2%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
|| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 gt-cagtacaaatttttgatgcacatacagttgtttgtgagacat--tgtcgaccatcca 117
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>46128_miR398:micropc
Length = 140
Score = 204 bits (103), Expect = 1e-53
Identities = 134/142 (94%), Gaps = 3/142 (2%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
|| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 gt-cagtacaaatttttgatgcacatacagttgtttgtgagacat--tgtcgaccatcca 117
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>45118_miR398:micropc
Length = 139
Score = 204 bits (103), Expect = 1e-53
Identities = 134/142 (94%), Gaps = 3/142 (2%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgctatctccactgcatattcatatgtt 60
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 1 aggagtgacactaagaacacatatggttgaattgctatctccagtgtatattcatatgtt 60
Query: 61 gtacagtacaaattttcgatgcacatacagttgtttgtgagacattgtgtgaaccatcca 120
|| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 61 gt-cagtacaaatttttgatgcacatacagttgtttgtgagacat--tgtcgaccatcca 117
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>46703_miR398:micropc
Length = 149
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgct 36
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaattgct 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgt 98
||||||||||| |||||||| | | |||||||||| ||||||||
Sbjct: 63 atatgttgtactgtacaaatatccaatgcacatacttttgtttgt 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46028_miR398:micropc
Length = 150
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 aggagtgacactaagaacacatatggttgaattgct 36
||||||||||||||||||||||||||| ||||||||
Sbjct: 1 aggagtgacactaagaacacatatggtggaattgct 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 54 atatgttgtacagtacaaattttcgatgcacatacagttgtttgt 98
||||||||||| |||||||| | | |||||||||| ||||||||
Sbjct: 63 atatgttgtactgtacaaatatccaatgcacatacttttgtttgt 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46478_miR398:micropc
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 catttgtgttctcaggtcacccct 142
||||||||||||||||||||||||
Sbjct: 82 catttgtgttctcaggtcacccct 105
>46384_miR398:micropc
Length = 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 catttgtgttctcaggtcacccct 142
||||||||||||||||||||||||
Sbjct: 83 catttgtgttctcaggtcacccct 106
>46310_miR398:micropc
Length = 113
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 91 tttgtgttctcaggtcacccct 112
>46301_miR398:micropc
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 90 tttgtgttctcaggtcacccct 111
>45772_miR398:micropc
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 70 tttgtgttctcaggtcacccct 91
>45427_miR398:micropc
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccct 94
>45083_miR398:micropc
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 70 tttgtgttctcaggtcacccct 91
>44964_miR398:micropc
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tttgtgttctcaggtcacccct 142
||||||||||||||||||||||
Sbjct: 73 tttgtgttctcaggtcacccct 94
>46761_miR398:micropc
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 112 ttgtgttctcaggtcacccct 132
>46499_miR398:micropc
Length = 67
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccct 66
>46491_miR398:micropc
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 111 ttgtgttctcaggtcacccct 131
>46328_miR398:micropc
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 118 ttgtgttctcaggtcacccct 138
>45871_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>45288_miR398:micropc
Length = 65
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 ttgtgttctcaggtcacccct 142
|||||||||||||||||||||
Sbjct: 45 ttgtgttctcaggtcacccct 65
>46124_miR398:micropc
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>45706_miR398:micropc
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 tgtgttctcaggtcacccct 142
||||||||||||||||||||
Sbjct: 76 tgtgttctcaggtcacccct 95
