miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45810_miR156:micropc
Length = 91
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||||||||||||||||||||
Sbjct: 62 ttatgcgtgtgcccacttctcttgctgtc 90
>45582_miR156:micropc
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45113_miR156:micropc
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>45062_miR156:micropc
Length = 91
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>45047_miR156:micropc
Length = 91
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>45528_miR156:micropc
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 60
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 61 ttatgcgtgtgctcacttctcttgctgtc 89
>44842_miR156:micropc
Length = 91
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 gacagaagagagtgagcatatgcaaagcaattgtataaaaaaactatacatttgttggaa 61
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
|||||||||||| ||||||||||||||||
Sbjct: 62 ttatgcgtgtgctcacttctcttgctgtc 90
>46798_miR156:micropc
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 78/89 (87%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 2 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 56
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
||||||||||| ||||||||||||||||
Sbjct: 57 atatgcgtgtgctcacttctcttgctgtc 85
>45125_miR156:micropc
Length = 84
Score = 69.9 bits (35), Expect = 3e-13
Identities = 78/89 (87%), Gaps = 5/89 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
|||||||||||||||||||||||||| ||||||||||| | | |||||| |||| ||
Sbjct: 1 gacagaagagagtgagcatatgcaaa-caattgtatag-agaggtatacacttgt---aa 55
Query: 61 ttatgcgtgtgcccacttctcttgctgtc 89
||||||||||| ||||||||||||||||
Sbjct: 56 atatgcgtgtgctcacttctcttgctgtc 84
>46175_miR156:micropc
Length = 92
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 2 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 59
Query: 61 tt---atgcgtgtgcccacttctcttgctgtc 89
|| |||||||||| ||||||||||||||||
Sbjct: 60 ttatgatgcgtgtgctcacttctcttgctgtc 91
>45587_miR156:micropc
Length = 90
Score = 67.9 bits (34), Expect = 1e-12
Identities = 80/92 (86%), Gaps = 5/92 (5%)
Strand = Plus / Plus
Query: 1 gacagaagagagtgagcatatgcaaagcaattgtatagaaaaactatacatttgttggaa 60
||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||| ||
Sbjct: 1 gacagaagagagtgagcatatgc-aagcaattgtatagagaga-tatgctcttgttgtaa 58
Query: 61 tt---atgcgtgtgcccacttctcttgctgtc 89
|| |||||||||| ||||||||||||||||
Sbjct: 59 ttatgatgcgtgtgctcacttctcttgctgtc 90
>46803_miR156:micropc
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
||||||||||||||||||||| |||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>46709_miR156:micropc
Length = 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
||||||||||||||||||||| |||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>46069_miR156:micropc
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
||||||||||||||||||||| |||||||||| |||||
Sbjct: 51 ttgttggaattatgcgtgtgctcacttctctttctgtc 88
>45385_miR156:micropc
Length = 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
||||||||||||||||||||| |||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>45182_miR156:micropc
Length = 90
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctcttgctgtc 89
||||||||||||||||||||| |||||||||| |||||
Sbjct: 52 ttgttggaattatgcgtgtgctcacttctctttctgtc 89
>46842_miR156:micropc
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctctt 83
||||||||||||||||||||| ||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>46146_miR156:micropc
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 52 ttgttggaattatgcgtgtgcccacttctctt 83
||||||||||||||||||||| ||||||||||
Sbjct: 49 ttgttggaattatgcgtgtgctcacttctctt 80
>44793_miR156:micropc
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 actatacatttgttggaattatgcgtgtgcccacttctctt 83
||||||| ||||| || |||||||||||| ||||||||||
Sbjct: 42 actatactcttgtttgagttatgcgtgtgctcacttctctt 82
